Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67412 | Canola | nucleus | 83.87 | 91.32 |
| AT5G38600.1 | Thale cress | nucleus | 70.02 | 69.36 |
| CDY12628 | Canola | nucleus | 48.01 | 58.03 |
| CDY46038 | Canola | nucleus | 47.63 | 56.79 |
| KRH18266 | Soybean | nucleus | 40.04 | 40.81 |
| KRG93782 | Soybean | nucleus | 39.66 | 40.27 |
| Solyc03g045060.2.1 | Tomato | nucleus | 38.14 | 37.92 |
| Os06t0495700-00 | Rice | nucleus | 34.16 | 37.04 |
| GSMUA_Achr5P23660_001 | Banana | nucleus | 32.83 | 36.97 |
| EES05262 | Sorghum | nucleus | 34.72 | 35.26 |
| VIT_14s0083g00220.t01 | Wine grape | nucleus | 41.75 | 34.98 |
| PGSC0003DMT400008672 | Potato | nucleus | 11.39 | 33.9 |
| Zm00001d050793_P001 | Maize | nucleus | 34.54 | 33.52 |
| TraesCS4B01G002400.2 | Wheat | nucleus | 33.78 | 31.9 |
| TraesCS4A01G000900.1 | Wheat | nucleus | 33.78 | 30.48 |
| KRG93822 | Soybean | nucleus | 31.31 | 30.44 |
| HORVU4Hr1G000670.1 | Barley | nucleus | 33.21 | 30.07 |
| TraesCS4D01G000900.2 | Wheat | nucleus | 32.83 | 29.98 |
Protein Annotations
| EnsemblPlants:CDY49079 | EnsemblPlantsGene:GSBRNA2T00092304001 | GO:A0A078II84 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR001878 | InterPro:PSP_pro-rich | InterPro:Znf_CCHC | PANTHER:PTHR13316 | PANTHER:PTHR13316:SF0 |
| PFAM:PF04046 | PFscan:PS50158 | ProteinID:CDY49079 | ProteinID:CDY49079.1 | SEG:seg | SMART:SM00581 |
| UniParc:UPI0004EEDBF7 | UniProt:A0A078II84 | MapMan:16.8.1.2.3.3 | : | : | : |
Description
BnaC06g12390DBnaC06g12390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078II84]
Coordinates
chrLK032809:-:67805..70945
Molecular Weight (calculated)
60093.6 Da
IEP (calculated)
4.601
GRAVY (calculated)
-1.157
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAEDALDLL PASGSSGLKV ENNGLESGSG SPEANLLVDN EERMGRDLDL VEEDLTTVGG EISAEQVSHV VAVDEKLRIH KETALDVCSN SGVTRPQTVS
101: DQQQPTVHVT FTRLTRASKQ KLESLLQQWS EWEAEYTSQA QDQEQPLESG EETYFPALRI GLQKTSSVSF WIDNQTGPKP LEEFVLVESS TTPLYDRKFS
201: LGSNSAGGPI SLQGGVEIID DDPPRCFNCG GYSHSLRECP KPFDRAAVNS ARKLQKSKRN QNTGSRLPSR YYQKAQSGKY DGLKPGTLDA ETRQLLNLGE
301: LDPPPWLNRM REIGYPPGYL APEDDHMSGI TIFGDEMEET QEEIESEDGE ILEKATPPEP QMKMTVEFPG INAPLPENAD EWLWDAAAAP SHRSSRSNNN
401: RWQQRTGRGH DYRDDDQLGF EPSSYPPRYG SRSDYGYGSK DPRSRSRSPI MERSLTERSK RDYYSSRDSD FMDRDRNKDR NRGWDRDRDW DRDDRNRDRD
501: RGDRDRDWDR DRDRDDRDWS YRLSSRR
101: DQQQPTVHVT FTRLTRASKQ KLESLLQQWS EWEAEYTSQA QDQEQPLESG EETYFPALRI GLQKTSSVSF WIDNQTGPKP LEEFVLVESS TTPLYDRKFS
201: LGSNSAGGPI SLQGGVEIID DDPPRCFNCG GYSHSLRECP KPFDRAAVNS ARKLQKSKRN QNTGSRLPSR YYQKAQSGKY DGLKPGTLDA ETRQLLNLGE
301: LDPPPWLNRM REIGYPPGYL APEDDHMSGI TIFGDEMEET QEEIESEDGE ILEKATPPEP QMKMTVEFPG INAPLPENAD EWLWDAAAAP SHRSSRSNNN
401: RWQQRTGRGH DYRDDDQLGF EPSSYPPRYG SRSDYGYGSK DPRSRSRSPI MERSLTERSK RDYYSSRDSD FMDRDRNKDR NRGWDRDRDW DRDDRNRDRD
501: RGDRDRDWDR DRDRDDRDWS YRLSSRR
001: METEDVLDIP ASSNFGSEVK KNSLESGNGS PEANSLVGND ENVKGNLDLD LTEENLRIVG GQESGEILTE QVSDVFNASV ESVAVDEKLG IQKETLVHST
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
Arabidopsis Description
Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Source:UniProtKB/TrEMBL;Acc:Q93YW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.