Factsheet for TraesCS4B01G002400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G076800.1
TraesCS4B01G232900.1
TraesCS4D01G234100.1
TraesCS5A01G298000.1
TraesCS5B01G297000.2
TraesCS5D01G304800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38600.1	TraesCS4A01G076800.1	AT2G32840.1	21798944
AT5G38600.1	TraesCS4B01G232900.1	AT2G32840.1	21798944
AT5G38600.1	TraesCS4D01G234100.1	AT2G32840.1	21798944
AT5G38600.1	TraesCS5A01G298000.1	AT2G43370.1	21798944
AT5G38600.1	TraesCS5B01G297000.2	AT2G43370.1	21798944
AT5G38600.1	TraesCS5D01G304800.1	AT2G43370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G000900.2	Wheat	nucleus	69.89	67.59
HORVU4Hr1G000670.1	Barley	nucleus	65.59	62.89
TraesCS4A01G000900.1	Wheat	nucleus	65.41	62.5
Os06t0495700-00	Rice	nucleus	50.72	58.23
EES05262	Sorghum	nucleus	53.76	57.8
Zm00001d050793_P001	Maize	nucleus	52.87	54.33
GSMUA_Achr5P23660_001	Banana	nucleus	37.28	44.44
AT1G67210.1	Thale cress	nucleus	31.72	43.7
CDY12628	Canola	nucleus	31.54	40.37
Bra034014.1-P	Field mustard	nucleus	31.18	39.55
CDY46038	Canola	nucleus	30.47	38.46
KRH18266	Soybean	nucleus	33.15	35.78
AT5G38600.1	Thale cress	nucleus	33.87	35.53
Bra028416.1-P	Field mustard	nucleus	27.24	35.43
CDX67412	Canola	nucleus	30.47	35.12
KRG93782	Soybean	nucleus	32.62	35.07
Solyc03g045060.2.1	Tomato	nucleus	32.62	34.34
VIT_01s0011g02770.t01	Wine grape	nucleus	23.84	34.02
CDY49079	Canola	nucleus	31.9	33.78
VIT_14s0083g00220.t01	Wine grape	nucleus	36.2	32.11
PGSC0003DMT400008672	Potato	nucleus	9.68	30.51
KRG93822	Soybean	nucleus	26.52	27.31

Protein Annotations

EnsemblPlants:TraesCS4B01G002400.2	EnsemblPlantsGene:TraesCS4B01G002400	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0008270	InterPro:IPR001878	InterPro:PSP_pro-rich	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	PANTHER:PTHR13316
PANTHER:PTHR13316:SF0	PFAM:PF04046	PFscan:PS50158	SEG:seg	SMART:SM00581	SUPFAM:SSF57756
MapMan:16.8.1.2.3.3	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:1258094..1262777

Molecular Weight (calculated)

61336.9 Da

IEP (calculated)

4.908

GRAVY (calculated)

-1.021

Length

558 amino acids

Sequence
(BLAST)

001: MEEFISLGAS EPGASEGIID LDHALQVDAV DLNLNLNAQP QGKPSTSTSS LLDIIDLEEG QVASQEASAQ HAQGTAADNP HQAKPQQEAL GANGGVGPPP
101: SDGVIDLEEG QVEDMDLSDD NALVVVTKQH GRVSAAQTPK ANNDGPPLST LIDQSPTRGV KRARAESTEP SVRVVYNNLT RESKKKLMEL MQQWSEWQAR
201: KQHASTETVE EVLDCGEETY YPALHVGSER SCAVSFWVDS QARGNAAVDD GAVPLYDREF TLGSTPMGDS SNAEGKKDKD DSRCFNCGSY SHALKDCPKP
301: RDHVAISNAR KQHNLKRNLS NVGNRGQNRY YQKTPGKFDD LKAGVLGSET RECLGLREND PPPWLHRMRE LGYPPGYLDE VEDEDKPSGI TIFGDGEVKE
401: EQQQQEEGEL LEKGEASSPR KRMTVGFPGI NAPVPENGDP WLWGSAPPPP LQSSSGRHNQ HSSSDSRDRA PPAPPGVEHY SSSRYHSYDY GPAIPGAGRR
501: SSSGYDDGAW TPSPSFSSRQ HSGSGSGSRE RERDWERERE RERERDRERD RHYYSSRR

Best Arabidopsis Sequence Match ( AT1G67210.1 )
(BLAST)

001: MAASSGSGLE AEEGEISIDM EEDMDLTEDD FRNVSGQFSG QASIVEVGDA VDVRVETVKV DVSSKSGVKR ARTISLEQQP SVHVTYKHLT RDSKQKLESL
101: LQQWSEWEAE QNSLSEDQEQ VLEAGDETYF PALRVGLQKT SSVSFWFDYQ TGHSSSKKSV PVESSTTPLY NRGFTIGLDS GSNNVEGGLE IIDDPPRCFN
201: CGAYSHSIRE CPRPFDRSAV SNARRQHKRK RNQTPGSRLP SRYYQSLQRG KYDGLKPGSL DAETRKLLGL KELDPPPWLN RMREIGYPPG YFAVEEDDDD
301: HSRITIFGEE ETKEEEEVKT EEGEILEKAS PQEPRKIMTV GFPGINAPIP ENADSWLWEQ RNSNTGHTNY HNHLRPQYEM GPLGIQLSSS FPPMHGIRYD
401: HRFGL

Arabidopsis Description

At1g67210 [Source:UniProtKB/TrEMBL;Acc:Q8LD15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.