CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12628	Canola	nucleus	90.5	91.74
Bra034014.1-P	Field mustard	nucleus	90.05	90.45
AT1G67210.1	Thale cress	nucleus	63.57	69.38
CDX67412	Canola	nucleus	54.98	50.21
CDY49079	Canola	nucleus	56.79	47.63
KRH18266	Soybean	nucleus	44.8	38.3
KRG93782	Soybean	nucleus	44.57	37.96
Os06t0495700-00	Rice	nucleus	40.27	36.63
EES05262	Sorghum	nucleus	41.4	35.26
GSMUA_Achr5P23660_001	Banana	nucleus	37.1	35.04
Zm00001d050793_P001	Maize	nucleus	42.53	34.62
Solyc03g045060.2.1	Tomato	nucleus	41.18	34.34
VIT_14s0083g00220.t01	Wine grape	nucleus	45.48	31.96
TraesCS4B01G002400.2	Wheat	nucleus	38.46	30.47
PGSC0003DMT400008672	Potato	nucleus	11.99	29.94
TraesCS4D01G000900.2	Wheat	nucleus	38.69	29.64
HORVU4Hr1G000670.1	Barley	nucleus	38.46	29.21
KRG93822	Soybean	nucleus	35.52	28.97
TraesCS4A01G000900.1	Wheat	nucleus	37.78	28.6

Protein Annotations

MapMan:16.8.1.2.3.3	GO:A0A078IA48	UniProt:A0A078IA48	EnsemblPlants:CDY46038	ProteinID:CDY46038	ProteinID:CDY46038.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00083162001	InterPro:IPR001878
PFAM:PF04046	PFscan:PS50158	InterPro:PSP_pro-rich	PANTHER:PTHR13316	PANTHER:PTHR13316:SF0	SMART:SM00343
SMART:SM00581	SUPFAM:SSF57756	UniParc:UPI0004EDFCD3	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg

Description

BnaC02g17280DBnaC02g17280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IA48]

Coordinates

chrLK032647:+:116853..119778

Molecular Weight (calculated)

49657.0 Da

IEP (calculated)

4.561

GRAVY (calculated)

-0.881

Length

442 amino acids

Sequence
(BLAST)

001: MAADSSFSGL EGQKDEHNSD MEEDMDLTED DFRNVSGQFS RETTSTATTV RDAVSVSLET VKVDVSSKTG VKRARTISEE NQSSVHVTYK HLTRASKQKL
101: ESLLQQWSEW EAEQSYLPCQ SDQDQEPALE SGEDTYFPAL RVGLQKTSSV SFWFDCKTGQ DSLKEFVPVE SSTTPLYNRQ FAIGLDSTVG SSNLEGGLEI
201: IDDDPPRCFN CGAYSHSMRE CPKPFDRSAV NIARRQHKSK RNQSSRLIPS RYYKSAQGGK YDGLKPGSLD PETRQVLGLG ELDPPPWLHR MREIGYPPGY
301: LAVEEDHLSG ITIFDEEETE PEEEEKEEGE VKAEDGEILE VAASSSEPPQ MKMTVEFPGI NAPIPENADV WLWQQRKNTG HGYNHDHQYR GVMGPPGVEL
401: SSSYPPRYGG IRYDHGFGSI ARSPGSESER RYYYSPYDQN LR

Best Arabidopsis Sequence Match ( AT1G67210.1 )
(BLAST)

001: MAASSGSGLE AEEGEISIDM EEDMDLTEDD FRNVSGQFSG QASIVEVGDA VDVRVETVKV DVSSKSGVKR ARTISLEQQP SVHVTYKHLT RDSKQKLESL
101: LQQWSEWEAE QNSLSEDQEQ VLEAGDETYF PALRVGLQKT SSVSFWFDYQ TGHSSSKKSV PVESSTTPLY NRGFTIGLDS GSNNVEGGLE IIDDPPRCFN
201: CGAYSHSIRE CPRPFDRSAV SNARRQHKRK RNQTPGSRLP SRYYQSLQRG KYDGLKPGSL DAETRKLLGL KELDPPPWLN RMREIGYPPG YFAVEEDDDD
301: HSRITIFGEE ETKEEEEVKT EEGEILEKAS PQEPRKIMTV GFPGINAPIP ENADSWLWEQ RNSNTGHTNY HNHLRPQYEM GPLGIQLSSS FPPMHGIRYD
401: HRFGL

Arabidopsis Description

At1g67210 [Source:UniProtKB/TrEMBL;Acc:Q8LD15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.