Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12628 | Canola | nucleus | 95.68 | 96.56 |
| CDY46038 | Canola | nucleus | 90.45 | 90.05 |
| AT1G67210.1 | Thale cress | nucleus | 67.5 | 73.33 |
| Bra028416.1-P | Field mustard | nucleus | 48.41 | 49.65 |
| KRH18266 | Soybean | nucleus | 45.91 | 39.07 |
| KRG93782 | Soybean | nucleus | 45.91 | 38.92 |
| Os06t0495700-00 | Rice | nucleus | 41.14 | 37.24 |
| Solyc03g045060.2.1 | Tomato | nucleus | 43.86 | 36.42 |
| EES05262 | Sorghum | nucleus | 42.05 | 35.65 |
| Zm00001d050793_P001 | Maize | nucleus | 42.95 | 34.81 |
| GSMUA_Achr5P23660_001 | Banana | nucleus | 36.82 | 34.62 |
| VIT_14s0083g00220.t01 | Wine grape | nucleus | 47.5 | 33.23 |
| TraesCS4B01G002400.2 | Wheat | nucleus | 39.55 | 31.18 |
| PGSC0003DMT400008672 | Potato | nucleus | 12.05 | 29.94 |
| TraesCS4D01G000900.2 | Wheat | nucleus | 38.86 | 29.64 |
| HORVU4Hr1G000670.1 | Barley | nucleus | 38.86 | 29.38 |
| KRG93822 | Soybean | nucleus | 36.14 | 29.34 |
| TraesCS4A01G000900.1 | Wheat | nucleus | 38.18 | 28.77 |
Protein Annotations
| EnsemblPlants:Bra034014.1 | EnsemblPlants:Bra034014.1-P | EnsemblPlantsGene:Bra034014 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR001878 | InterPro:PSP_pro-rich | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | PANTHER:PTHR13316 |
| PANTHER:PTHR13316:SF0 | PFAM:PF04046 | PFscan:PS50158 | SEG:seg | SMART:SM00343 | SMART:SM00581 |
| SUPFAM:SSF57756 | UniParc:UPI0002545F06 | UniProt:M4EYX2 | MapMan:16.8.1.2.3.3 | : | : |
Description
AT1G67210 (E=5e-136) | proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein
Coordinates
chrA02:+:10200684..10202804
Molecular Weight (calculated)
49471.0 Da
IEP (calculated)
4.626
GRAVY (calculated)
-0.876
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATSFSGLE GQRDEHNSDM EEDMDLTEDD FRNVSGQFSR DTSIAEDKDA VTVSAETVKV DVSSKSGVKR ARTISEENQP SVHVTYKHLT RASKQKLEIL
101: LQQWSEWEAE QTSLLCQSDQ DQEPALESGE DTYFPALRVG LQKTSSVSFW FDCKTGQDSL KEFVPVESST TPLYNRKFAI GLDSTVGSSN VEGGLEIIDD
201: DPPRCFNCGA YSHSMRECPK PFDRSAVNIA RRQHKSKRNQ SSRLIPSRYY KSAQGGKYDG LKPGSLDPET RQLLGLGELD PPPWLHRMRE IGYPPGYLAV
301: EEDHLSGITI FDEEETKPPE EEEKEEGEVK AEDGEILEVA ASSSEPPQMK MTVEFPGINA PIPENADVWL WQQRKNTGHG YNHDQHYRGV MGPPGVELSS
401: SYPPRYGGIR YDHGFGSIAR SPGSESERRY YYSQYDQNLR
101: LQQWSEWEAE QTSLLCQSDQ DQEPALESGE DTYFPALRVG LQKTSSVSFW FDCKTGQDSL KEFVPVESST TPLYNRKFAI GLDSTVGSSN VEGGLEIIDD
201: DPPRCFNCGA YSHSMRECPK PFDRSAVNIA RRQHKSKRNQ SSRLIPSRYY KSAQGGKYDG LKPGSLDPET RQLLGLGELD PPPWLHRMRE IGYPPGYLAV
301: EEDHLSGITI FDEEETKPPE EEEKEEGEVK AEDGEILEVA ASSSEPPQMK MTVEFPGINA PIPENADVWL WQQRKNTGHG YNHDQHYRGV MGPPGVELSS
401: SYPPRYGGIR YDHGFGSIAR SPGSESERRY YYSQYDQNLR
001: MAASSGSGLE AEEGEISIDM EEDMDLTEDD FRNVSGQFSG QASIVEVGDA VDVRVETVKV DVSSKSGVKR ARTISLEQQP SVHVTYKHLT RDSKQKLESL
101: LQQWSEWEAE QNSLSEDQEQ VLEAGDETYF PALRVGLQKT SSVSFWFDYQ TGHSSSKKSV PVESSTTPLY NRGFTIGLDS GSNNVEGGLE IIDDPPRCFN
201: CGAYSHSIRE CPRPFDRSAV SNARRQHKRK RNQTPGSRLP SRYYQSLQRG KYDGLKPGSL DAETRKLLGL KELDPPPWLN RMREIGYPPG YFAVEEDDDD
301: HSRITIFGEE ETKEEEEVKT EEGEILEKAS PQEPRKIMTV GFPGINAPIP ENADSWLWEQ RNSNTGHTNY HNHLRPQYEM GPLGIQLSSS FPPMHGIRYD
401: HRFGL
101: LQQWSEWEAE QNSLSEDQEQ VLEAGDETYF PALRVGLQKT SSVSFWFDYQ TGHSSSKKSV PVESSTTPLY NRGFTIGLDS GSNNVEGGLE IIDDPPRCFN
201: CGAYSHSIRE CPRPFDRSAV SNARRQHKRK RNQTPGSRLP SRYYQSLQRG KYDGLKPGSL DAETRKLLGL KELDPPPWLN RMREIGYPPG YFAVEEDDDD
301: HSRITIFGEE ETKEEEEVKT EEGEILEKAS PQEPRKIMTV GFPGINAPIP ENADSWLWEQ RNSNTGHTNY HNHLRPQYEM GPLGIQLSSS FPPMHGIRYD
401: HRFGL
Arabidopsis Description
At1g67210 [Source:UniProtKB/TrEMBL;Acc:Q8LD15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.