Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G38600.1 | KRH13875 | AT2G32840.1 | 21798944 |
| AT5G38600.1 | KRH43426 | AT2G32840.1 | 21798944 |
| AT5G38600.1 | KRH01744 | AT2G43370.1 | 21798944 |
| AT5G38600.1 | KRH46935 | AT2G43370.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG93782 | Soybean | nucleus | 87.62 | 87.28 |
| KRG93822 | Soybean | nucleus | 74.08 | 70.66 |
| AT1G67210.1 | Thale cress | nucleus | 37.91 | 48.4 |
| Bra034014.1-P | Field mustard | nucleus | 39.07 | 45.91 |
| CDY12628 | Canola | nucleus | 38.68 | 45.87 |
| CDY46038 | Canola | nucleus | 38.3 | 44.8 |
| Solyc03g045060.2.1 | Tomato | nucleus | 45.45 | 44.34 |
| CDX67412 | Canola | nucleus | 39.65 | 42.36 |
| Bra028416.1-P | Field mustard | nucleus | 35.01 | 42.19 |
| VIT_14s0083g00220.t01 | Wine grape | nucleus | 51.26 | 42.13 |
| GSMUA_Achr5P23660_001 | Banana | nucleus | 38.1 | 42.09 |
| PGSC0003DMT400008672 | Potato | nucleus | 14.31 | 41.81 |
| AT5G38600.1 | Thale cress | nucleus | 42.75 | 41.54 |
| Os06t0495700-00 | Rice | nucleus | 38.1 | 40.53 |
| CDY49079 | Canola | nucleus | 40.81 | 40.04 |
| EES05262 | Sorghum | nucleus | 39.85 | 39.69 |
| Zm00001d050793_P001 | Maize | nucleus | 38.49 | 36.65 |
| TraesCS4B01G002400.2 | Wheat | nucleus | 35.78 | 33.15 |
| HORVU4Hr1G000670.1 | Barley | nucleus | 35.2 | 31.27 |
| TraesCS4A01G000900.1 | Wheat | nucleus | 33.66 | 29.79 |
| TraesCS4D01G000900.2 | Wheat | nucleus | 33.08 | 29.64 |
Protein Annotations
| EntrezGene:100527170 | MapMan:16.8.1.2.3.3 | EMBL:ACUP02008050 | EnsemblPlantsGene:GLYMA_13G047700 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR001878 | UniProt:K7LXS2 | EnsemblPlants:KRH18266 | ProteinID:KRH18266 |
| ProteinID:KRH18266.1 | ProteinID:KRH18267.1 | PFAM:PF04046 | PFscan:PS50158 | InterPro:PSP_pro-rich | PANTHER:PTHR13316 |
| PANTHER:PTHR13316:SF0 | SMART:SM00581 | SUPFAM:SSF57756 | UniParc:UPI0002964CE3 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:+:14303335..14313128
Molecular Weight (calculated)
57909.2 Da
IEP (calculated)
5.396
GRAVY (calculated)
-1.034
Length
517 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDELMNPS ESSNLGSDSL EKEKILEDET EDLQDGLKLS VVTEEMSGGV LAENGCISLE DGSLKRSIET VETSVSGAKR ARITVDEDQP SVHFTYNSLT
101: RASRQKLQEL LQQWSEWHAK HVLSSNDASE VLESGEETFF PALHVGLEKT SAVSFWMENQ TRKDKNKDFI PLADNSVPLY DRGYTLGLTS ADGSSNVDGG
201: LEIIDAAARC FNCGSYNHSL RECPRPRDNT AVNNARNKHK SRRNQNSSSR NPTRYYQNSP AGKYDGLRPG ALDDATRQLL GLGELDPPPW LNRMRELGYP
301: PGYLDVDDED QPSGITIYTD REIADQEDGE IMEADASKPK RKKTVKFPGI NAPIPDNADE RLWGTRAGPS SSDISRNLSL PQHRSNYSTD YGSRGYHREH
401: RLGDLRDDGP PGDPGHSSSK FSFHPRFGGH DSALRSPSMA RSQSDRSRSP MHDEESPMPF SFHSLHYSSS ERHFSPLDPD SGRPGSRTSE SMYYDRDRDL
501: SSRVKDRPDD RHHRSWR
101: RASRQKLQEL LQQWSEWHAK HVLSSNDASE VLESGEETFF PALHVGLEKT SAVSFWMENQ TRKDKNKDFI PLADNSVPLY DRGYTLGLTS ADGSSNVDGG
201: LEIIDAAARC FNCGSYNHSL RECPRPRDNT AVNNARNKHK SRRNQNSSSR NPTRYYQNSP AGKYDGLRPG ALDDATRQLL GLGELDPPPW LNRMRELGYP
301: PGYLDVDDED QPSGITIYTD REIADQEDGE IMEADASKPK RKKTVKFPGI NAPIPDNADE RLWGTRAGPS SSDISRNLSL PQHRSNYSTD YGSRGYHREH
401: RLGDLRDDGP PGDPGHSSSK FSFHPRFGGH DSALRSPSMA RSQSDRSRSP MHDEESPMPF SFHSLHYSSS ERHFSPLDPD SGRPGSRTSE SMYYDRDRDL
501: SSRVKDRPDD RHHRSWR
001: METEDVLDIP ASSNFGSEVK KNSLESGNGS PEANSLVGND ENVKGNLDLD LTEENLRIVG GQESGEILTE QVSDVFNASV ESVAVDEKLG IQKETLVHST
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
Arabidopsis Description
Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Source:UniProtKB/TrEMBL;Acc:Q93YW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.