Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67412 | Canola | nucleus | 65.79 | 72.31 |
| Bra028416.1-P | Field mustard | nucleus | 57.71 | 71.56 |
| CDY49079 | Canola | nucleus | 69.36 | 70.02 |
| AT1G67210.1 | Thale cress | nucleus | 47.18 | 61.98 |
| KRG93782 | Soybean | nucleus | 41.73 | 42.77 |
| KRH18266 | Soybean | nucleus | 41.54 | 42.75 |
| Solyc03g045060.2.1 | Tomato | nucleus | 38.72 | 38.87 |
| Os06t0495700-00 | Rice | nucleus | 34.59 | 37.86 |
| GSMUA_Achr5P23660_001 | Banana | nucleus | 33.08 | 37.61 |
| EES05262 | Sorghum | nucleus | 35.53 | 36.42 |
| PGSC0003DMT400008672 | Potato | nucleus | 12.03 | 36.16 |
| Zm00001d050793_P001 | Maize | nucleus | 35.71 | 34.99 |
| VIT_14s0083g00220.t01 | Wine grape | nucleus | 40.98 | 34.66 |
| TraesCS4B01G002400.2 | Wheat | nucleus | 35.53 | 33.87 |
| TraesCS4D01G000900.2 | Wheat | nucleus | 35.34 | 32.58 |
| KRG93822 | Soybean | nucleus | 32.71 | 32.1 |
| HORVU4Hr1G000670.1 | Barley | nucleus | 34.59 | 31.62 |
| TraesCS4A01G000900.1 | Wheat | nucleus | 34.21 | 31.16 |
Protein Annotations
| MapMan:16.8.1.2.3.3 | EntrezGene:833850 | ProteinID:AED94340.1 | ProteinID:ANM70042.1 | ArrayExpress:AT5G38600 | EnsemblPlantsGene:AT5G38600 |
| RefSeq:AT5G38600 | TAIR:AT5G38600 | RefSeq:AT5G38600-TAIR-G | EnsemblPlants:AT5G38600.1 | TAIR:AT5G38600.1 | EMBL:AY059738 |
| EMBL:AY096461 | Unigene:At.8680 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008150 |
| GO:GO:0008270 | InterPro:IPR001878 | RefSeq:NP_001331680.1 | RefSeq:NP_568558.1 | PFAM:PF04046 | PO:PO:0000005 |
| PO:PO:0000293 | PFscan:PS50158 | InterPro:PSP_pro-rich | PANTHER:PTHR13316 | PANTHER:PTHR13316:SF0 | UniProt:Q93YW4 |
| SMART:SM00581 | UniParc:UPI000009F405 | InterPro:Znf_CCHC | SEG:seg | : | : |
Description
Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Source:UniProtKB/TrEMBL;Acc:Q93YW4]
Coordinates
chr5:+:15456555..15460767
Molecular Weight (calculated)
60553.0 Da
IEP (calculated)
4.725
GRAVY (calculated)
-1.141
Length
532 amino acids
Sequence
(BLAST)
(BLAST)
001: METEDVLDIP ASSNFGSEVK KNSLESGNGS PEANSLVGND ENVKGNLDLD LTEENLRIVG GQESGEILTE QVSDVFNASV ESVAVDEKLG IQKETLVHST
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.