Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P06320_001 | |
| GSMUA_Achr7P11350_001 | |
| GSMUA_Achr8P09080_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G38600.1 | GSMUA_Achr6P06320_001 | AT2G32840.1 | 21798944 |
| AT5G38600.1 | GSMUA_Achr7P11350_001 | AT2G32840.1 | 21798944 |
| AT5G38600.1 | GSMUA_Achr8P09080_001 | AT2G43370.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05262 | Sorghum | nucleus | 50.0 | 45.09 |
| Os06t0495700-00 | Rice | nucleus | 46.79 | 45.06 |
| Zm00001d050793_P001 | Maize | nucleus | 48.93 | 42.17 |
| KRH18266 | Soybean | nucleus | 42.09 | 38.1 |
| AT1G67210.1 | Thale cress | nucleus | 32.91 | 38.02 |
| CDY12628 | Canola | nucleus | 35.26 | 37.84 |
| KRG93782 | Soybean | nucleus | 41.45 | 37.38 |
| TraesCS4B01G002400.2 | Wheat | nucleus | 44.44 | 37.28 |
| CDY46038 | Canola | nucleus | 35.04 | 37.1 |
| Bra034014.1-P | Field mustard | nucleus | 34.62 | 36.82 |
| TraesCS4D01G000900.2 | Wheat | nucleus | 45.3 | 36.74 |
| CDX67412 | Canola | nucleus | 37.39 | 36.16 |
| TraesCS4A01G000900.1 | Wheat | nucleus | 45.09 | 36.13 |
| HORVU4Hr1G000670.1 | Barley | nucleus | 44.87 | 36.08 |
| VIT_01s0011g02770.t01 | Wine grape | nucleus | 29.7 | 35.55 |
| VIT_14s0083g00220.t01 | Wine grape | nucleus | 47.65 | 35.45 |
| Bra028416.1-P | Field mustard | nucleus | 32.48 | 35.43 |
| Solyc03g045060.2.1 | Tomato | nucleus | 39.1 | 34.53 |
| PGSC0003DMT400008672 | Potato | nucleus | 12.61 | 33.33 |
| AT5G38600.1 | Thale cress | nucleus | 37.61 | 33.08 |
| CDY49079 | Canola | nucleus | 36.97 | 32.83 |
| KRG93822 | Soybean | nucleus | 33.76 | 29.15 |
Protein Annotations
| MapMan:16.8.1.2.3.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008270 | EnsemblPlantsGene:GSMUA_Achr5G23660_001 |
| EnsemblPlants:GSMUA_Achr5P23660_001 | EnsemblPlants:GSMUA_Achr5T23660_001 | InterPro:IPR001878 | UniProt:M0T141 | PFAM:PF04046 | PFscan:PS50158 |
| InterPro:PSP_pro-rich | PANTHER:PTHR13316 | PANTHER:PTHR13316:SF0 | SMART:SM00343 | SMART:SM00581 | SUPFAM:SSF57756 |
| UniParc:UPI000296E9F6 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : |
Description
PSP domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G23660_001]
Coordinates
chr5:-:25332747..25341199
Molecular Weight (calculated)
53093.1 Da
IEP (calculated)
6.405
GRAVY (calculated)
-1.020
Length
468 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLEDDLVQR QTILYERVEI VGSPIVEQLK GEGEQHKETV RAATLNNSTS NNNVIDESPI AGVKRARMTY IEKQPSVRVI YNSLARESKR KLMGLMQQWS
101: QWQAKHQLSS SESEDVPLED GEETYFPALH VDSKKSSVVT FWVDKQARQD VDKDKVKFEA DVPLYDREYT LGSTSVDGSS GPEGIEALGA SRCFNCGSYS
201: HSLRDCPKPR DNIAISNARK MHTSKRNPTA GNHAQVRYYL KAPGKFDNLQ AGVLGAETRE CLGIGEYDPP PWFHRMREMG YPPGYLDVDD EDQPSGITIY
301: ADEETKEEYE DGELPERSEP EPPQRKMTVK FPGINAPLLE NADHHRWAAP WPSDLRVNGA PDTEHVFSSS YPGYSPRYSP YNYNPIPRSP DLGRSLSDRG
401: WRSPLHYETS PAHSPHSPHP YPSATHSPKD HHWSHDHWSN KSSYGRIPDS ASQKAQDRHD HRGSHHRR
101: QWQAKHQLSS SESEDVPLED GEETYFPALH VDSKKSSVVT FWVDKQARQD VDKDKVKFEA DVPLYDREYT LGSTSVDGSS GPEGIEALGA SRCFNCGSYS
201: HSLRDCPKPR DNIAISNARK MHTSKRNPTA GNHAQVRYYL KAPGKFDNLQ AGVLGAETRE CLGIGEYDPP PWFHRMREMG YPPGYLDVDD EDQPSGITIY
301: ADEETKEEYE DGELPERSEP EPPQRKMTVK FPGINAPLLE NADHHRWAAP WPSDLRVNGA PDTEHVFSSS YPGYSPRYSP YNYNPIPRSP DLGRSLSDRG
401: WRSPLHYETS PAHSPHSPHP YPSATHSPKD HHWSHDHWSN KSSYGRIPDS ASQKAQDRHD HRGSHHRR
001: METEDVLDIP ASSNFGSEVK KNSLESGNGS PEANSLVGND ENVKGNLDLD LTEENLRIVG GQESGEILTE QVSDVFNASV ESVAVDEKLG IQKETLVHST
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
Arabidopsis Description
Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Source:UniProtKB/TrEMBL;Acc:Q93YW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.