Factsheet for VIT_01s0011g02770.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P23660_001	Banana	nucleus	35.55	29.7
Os06t0495700-00	Rice	nucleus	36.57	29.42
VIT_14s0083g00220.t01	Wine grape	nucleus	45.78	28.46
EES05262	Sorghum	nucleus	36.83	27.75
Zm00001d050793_P001	Maize	nucleus	35.55	25.6
TraesCS4B01G002400.2	Wheat	nucleus	34.02	23.84
TraesCS4D01G000900.2	Wheat	nucleus	34.27	23.22
HORVU4Hr1G000670.1	Barley	nucleus	34.27	23.02
TraesCS4A01G000900.1	Wheat	nucleus	34.02	22.77

Protein Annotations

EntrezGene:100267904	wikigene:100267904	MapMan:16.8.1.2.3.3	UniProt:A5BQF2	EMBL:AM467489	ProteinID:CAN74876
ProteinID:CAN74876.1	ProteinID:CCB50959	ProteinID:CCB50959.1	EMBL:FN595752	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0008270	InterPro:IPR001878	EntrezGene:LOC100267904	wikigene:LOC100267904	PFAM:PF04046
PFscan:PS50158	InterPro:PSP_pro-rich	PANTHER:PTHR13316	PANTHER:PTHR13316:SF0	SMART:SM00581	SUPFAM:SSF57756
UniParc:UPI000152189A	ArrayExpress:VIT_01s0011g02770	EnsemblPlantsGene:VIT_01s0011g02770	EnsemblPlants:VIT_01s0011g02770.t01	RefSeq:XP_002278440	RefSeq:XP_002278440.2
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:2471085..2475356

Molecular Weight (calculated)

43770.5 Da

IEP (calculated)

5.904

GRAVY (calculated)

-0.893

Length

391 amino acids

Sequence
(BLAST)

001: MDNQVKEKKN EGFISLNDNA IPLYDREYAL GLTSMDDLNN LERGLETLDA SRCFNCGSYN HSLKECPKPR DTVAVNNARK QHQSKRNQPV GPRIATRYYQ
101: NSPGGKYDGL KPGVLGPETR KILNLGEFDP PPWLNRMREI GYPPGYLDAV DEDQSSGIII YADEETREEE DKENLKLNTS ILQKTMSVDF PGINAPIPEH
201: ADERRWTTSQ LPVSFDSLRN RANLRSNCSS ESISNGLPHN QRGPRDYRDG GFPGYSPTMF DHSRGYSGFS LSRPSEYFSL RGDNPNGYSG CSPNYASDPF
301: SPRGDNLGFY NPFSPNITGD AFSPRGDLLM RGPSLGRSMS DRGRSSLFLE GSSHTTDTLL PYASSGLLQS PHDYGSFRFE APAYEGHWRP Y

Best Arabidopsis Sequence Match ( AT5G38600.1 )
(BLAST)

001: METEDVLDIP ASSNFGSEVK KNSLESGNGS PEANSLVGND ENVKGNLDLD LTEENLRIVG GQESGEILTE QVSDVFNASV ESVAVDEKLG IQKETLVHST
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR

Arabidopsis Description

Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Source:UniProtKB/TrEMBL;Acc:Q93YW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.