Factsheet for Bra028416.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000304.1-P
Bra005553.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38600.1	Bra005553.1-P	AT2G32840.1	21798944
AT5G38600.1	Bra000304.1-P	AT2G43370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67412	Canola	nucleus	96.04	85.12
AT5G38600.1	Thale cress	nucleus	71.56	57.71
Bra034014.1-P	Field mustard	nucleus	49.65	48.41
KRG93782	Soybean	nucleus	42.42	35.07
KRH18266	Soybean	nucleus	42.19	35.01
PGSC0003DMT400008672	Potato	nucleus	14.22	34.46
GSMUA_Achr5P23660_001	Banana	nucleus	35.43	32.48
Os06t0495700-00	Rice	nucleus	36.13	31.89
Solyc03g045060.2.1	Tomato	nucleus	39.39	31.89
EES05262	Sorghum	nucleus	35.9	29.67
VIT_14s0083g00220.t01	Wine grape	nucleus	43.12	29.41
Zm00001d050793_P001	Maize	nucleus	35.9	28.36
TraesCS4B01G002400.2	Wheat	nucleus	35.43	27.24
KRG93822	Soybean	nucleus	32.63	25.83
HORVU4Hr1G000670.1	Barley	nucleus	34.73	25.6
TraesCS4D01G000900.2	Wheat	nucleus	34.27	25.48
TraesCS4A01G000900.1	Wheat	nucleus	34.5	25.34

Protein Annotations

EnsemblPlants:Bra028416.1	EnsemblPlants:Bra028416.1-P	EnsemblPlantsGene:Bra028416	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0008270	InterPro:PSP_pro-rich	PANTHER:PTHR13316	PANTHER:PTHR13316:SF0	PFAM:PF04046	SEG:seg
SMART:SM00581	UniParc:UPI000254323F	UniProt:M4EI01	MapMan:16.8.1.2.3.3	:	:

Description

AT5G38600 (E=2e-131) | proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein

Coordinates

chrA02:+:190415..192801

Molecular Weight (calculated)

49507.6 Da

IEP (calculated)

4.738

GRAVY (calculated)

-1.233

Length

429 amino acids

Sequence
(BLAST)

001: MEAESMGRDL DLVEENLITV GGEISAEQVV AVDEKLCIHK ETALDDQEQP LESGEETFFP ALRFGLKKTS SVSFWIDNQT GPKPLEEFVL VESSTTPLYD
101: RKFSLGSNSA GGPISLQGGV EIIDDDPPRC FNCSGYSHSL RECPKPFDRA AVNSARKLQK SKRNQNAGSR LPSRYYQKAQ SGKYDGLKPG TLDAETRQLL
201: NLGELDPPPW LNRMREIGYP PGYLAPEDDH MSGITIFGDE MEETREEIES EDGEILEKTN PPEPQMKMTV EFPGINAPLP ENADEWLWDA AAAPSHRSSR
301: SNNNRWQQRT SRGHDYRDDD QLGFEPSSYP PRYGSRSDYG YGSKDRRSRS RSPIMERSLT ERSKRDYYSS RDSDFMDRDR NKDRNRGWDR DRDWDRDDRN
401: RDRGDRDRDR DWDRDRDDRD WSYRLSSRR

Best Arabidopsis Sequence Match ( AT5G38600.1 )
(BLAST)

001: METEDVLDIP ASSNFGSEVK KNSLESGNGS PEANSLVGND ENVKGNLDLD LTEENLRIVG GQESGEILTE QVSDVFNASV ESVAVDEKLG IQKETLVHST
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR

Arabidopsis Description

Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Source:UniProtKB/TrEMBL;Acc:Q93YW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.