Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g073920.2.1 | |
| Solyc09g098390.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G38600.1 | Solyc01g073920.2.1 | AT2G32840.1 | 21798944 |
| AT5G38600.1 | Solyc09g098390.2.1 | AT2G43370.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400008672 | Potato | nucleus | 29.81 | 89.27 |
| KRH18266 | Soybean | nucleus | 44.34 | 45.45 |
| AT1G67210.1 | Thale cress | nucleus | 33.96 | 44.44 |
| Bra034014.1-P | Field mustard | nucleus | 36.42 | 43.86 |
| CDY12628 | Canola | nucleus | 35.85 | 43.58 |
| KRG93782 | Soybean | nucleus | 42.45 | 43.35 |
| CDY46038 | Canola | nucleus | 34.34 | 41.18 |
| VIT_14s0083g00220.t01 | Wine grape | nucleus | 47.74 | 40.22 |
| CDX67412 | Canola | nucleus | 36.6 | 40.08 |
| Os06t0495700-00 | Rice | nucleus | 36.6 | 39.92 |
| Bra028416.1-P | Field mustard | nucleus | 31.89 | 39.39 |
| GSMUA_Achr5P23660_001 | Banana | nucleus | 34.53 | 39.1 |
| AT5G38600.1 | Thale cress | nucleus | 38.87 | 38.72 |
| CDY49079 | Canola | nucleus | 37.92 | 38.14 |
| EES05262 | Sorghum | nucleus | 36.42 | 37.19 |
| Zm00001d050793_P001 | Maize | nucleus | 36.79 | 35.91 |
| TraesCS4B01G002400.2 | Wheat | nucleus | 34.34 | 32.62 |
| KRG93822 | Soybean | nucleus | 33.02 | 32.29 |
| TraesCS4D01G000900.2 | Wheat | nucleus | 34.91 | 32.06 |
| TraesCS4A01G000900.1 | Wheat | nucleus | 34.34 | 31.16 |
| HORVU4Hr1G000670.1 | Barley | nucleus | 33.58 | 30.58 |
Protein Annotations
| EnsemblPlants:Solyc03g045060.2.1 | EnsemblPlantsGene:Solyc03g045060.2 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR001878 | InterPro:PSP_pro-rich | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | PANTHER:PTHR13316 |
| PANTHER:PTHR13316:SF0 | PFAM:PF00098 | PFAM:PF04046 | PFscan:PS50158 | SEG:seg | SMART:SM00343 |
| SMART:SM00581 | SUPFAM:SSF57756 | UniParc:UPI000276855E | UniProt:K4BGB8 | MapMan:16.8.1.2.3.3 | : |
Description
No Description!
Coordinates
chr3:-:11436728..11447307
Molecular Weight (calculated)
59358.8 Da
IEP (calculated)
4.979
GRAVY (calculated)
-0.992
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTEDPNNLP ASDNLERGIE NIEVGANGDT SKTTNFEVSE SNEPLRESDS DMDLESDPGS QVGVDLTGTP SQVCVELAET VGITEEVTMV DSVIHAENGL
101: LSLPDANYSS NQTEDQDHVS TQEIGGVKCL SGVKRPRATL DVEQPSVHVV YDSLTRESRK MLEGLLQQWS EWHAKHCSSA QDSRELLESG EETYFPALHV
201: GLEKPSAVTY WVDKQASNNK SEFIPLDGNS IPLYDRGYSF ALTATDSSTN VERGIEMVDS SRCFNCGSYG HALKECPKPR DNAAVNSARK QHKSRRNQSA
301: SSRNPTRYYQ DSPRGKYDGL RPGALDSETR KLLGLGELDP PPWINRMRQM GYPPGYLEDD EDQPSGITIF ADEKNKEETE EGEILDKSLP NLPRKMTVDF
401: PGVNAPIPEH ADERRWEAAP SSSRYSRSHS HNRYNHAQDY VNRGHYHEQR RSRDFEDDGP PGCDPRTSPL LSTYSYRYGA YDPRYSSHSP RDSASMPRSH
501: SFGRSLSERE RRNPIVKEGS YHHSFYGSPR
101: LSLPDANYSS NQTEDQDHVS TQEIGGVKCL SGVKRPRATL DVEQPSVHVV YDSLTRESRK MLEGLLQQWS EWHAKHCSSA QDSRELLESG EETYFPALHV
201: GLEKPSAVTY WVDKQASNNK SEFIPLDGNS IPLYDRGYSF ALTATDSSTN VERGIEMVDS SRCFNCGSYG HALKECPKPR DNAAVNSARK QHKSRRNQSA
301: SSRNPTRYYQ DSPRGKYDGL RPGALDSETR KLLGLGELDP PPWINRMRQM GYPPGYLEDD EDQPSGITIF ADEKNKEETE EGEILDKSLP NLPRKMTVDF
401: PGVNAPIPEH ADERRWEAAP SSSRYSRSHS HNRYNHAQDY VNRGHYHEQR RSRDFEDDGP PGCDPRTSPL LSTYSYRYGA YDPRYSSHSP RDSASMPRSH
501: SFGRSLSERE RRNPIVKEGS YHHSFYGSPR
001: METEDVLDIP ASSNFGSEVK KNSLESGNGS PEANSLVGND ENVKGNLDLD LTEENLRIVG GQESGEILTE QVSDVFNASV ESVAVDEKLG IQKETLVHST
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
Arabidopsis Description
Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Source:UniProtKB/TrEMBL;Acc:Q93YW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.