Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12628 | Canola | nucleus | 73.83 | 68.58 |
| Bra034014.1-P | Field mustard | nucleus | 73.33 | 67.5 |
| CDY46038 | Canola | nucleus | 69.38 | 63.57 |
| AT5G38600.1 | Thale cress | nucleus | 61.98 | 47.18 |
| KRH18266 | Soybean | nucleus | 48.4 | 37.91 |
| KRG93782 | Soybean | nucleus | 48.4 | 37.76 |
| Os06t0495700-00 | Rice | nucleus | 41.73 | 34.77 |
| Solyc03g045060.2.1 | Tomato | nucleus | 44.44 | 33.96 |
| EES05262 | Sorghum | nucleus | 43.46 | 33.91 |
| GSMUA_Achr5P23660_001 | Banana | nucleus | 38.02 | 32.91 |
| Zm00001d050793_P001 | Maize | nucleus | 43.7 | 32.6 |
| TraesCS4B01G002400.2 | Wheat | nucleus | 43.7 | 31.72 |
| VIT_14s0083g00220.t01 | Wine grape | nucleus | 48.15 | 31.0 |
| TraesCS4D01G000900.2 | Wheat | nucleus | 42.47 | 29.81 |
| HORVU4Hr1G000670.1 | Barley | nucleus | 41.48 | 28.87 |
| TraesCS4A01G000900.1 | Wheat | nucleus | 41.23 | 28.6 |
| KRG93822 | Soybean | nucleus | 36.54 | 27.31 |
| PGSC0003DMT400008672 | Potato | nucleus | 11.36 | 25.99 |
Protein Annotations
| MapMan:16.8.1.2.3.3 | EntrezGene:843041 | UniProt:A0A178WE12 | ProteinID:AEE34612.1 | ArrayExpress:AT1G67210 | EnsemblPlantsGene:AT1G67210 |
| RefSeq:AT1G67210 | TAIR:AT1G67210 | RefSeq:AT1G67210-TAIR-G | EnsemblPlants:AT1G67210.1 | TAIR:AT1G67210.1 | EMBL:AY086268 |
| Unigene:At.35675 | EMBL:BT026434 | EMBL:DQ446405 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008270 | InterPro:IPR001878 | RefSeq:NP_564890.1 | ProteinID:OAP16657.1 | PFAM:PF04046 |
| PO:PO:0000084 | PO:PO:0000293 | PFscan:PS50158 | InterPro:PSP_pro-rich | PANTHER:PTHR13316 | PANTHER:PTHR13316:SF0 |
| UniProt:Q8LD15 | SMART:SM00581 | UniParc:UPI00000A1D3B | InterPro:Znf_CCHC | SEG:seg | : |
Description
At1g67210 [Source:UniProtKB/TrEMBL;Acc:Q8LD15]
Coordinates
chr1:+:25140815..25144049
Molecular Weight (calculated)
45648.8 Da
IEP (calculated)
4.781
GRAVY (calculated)
-0.849
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASSGSGLE AEEGEISIDM EEDMDLTEDD FRNVSGQFSG QASIVEVGDA VDVRVETVKV DVSSKSGVKR ARTISLEQQP SVHVTYKHLT RDSKQKLESL
101: LQQWSEWEAE QNSLSEDQEQ VLEAGDETYF PALRVGLQKT SSVSFWFDYQ TGHSSSKKSV PVESSTTPLY NRGFTIGLDS GSNNVEGGLE IIDDPPRCFN
201: CGAYSHSIRE CPRPFDRSAV SNARRQHKRK RNQTPGSRLP SRYYQSLQRG KYDGLKPGSL DAETRKLLGL KELDPPPWLN RMREIGYPPG YFAVEEDDDD
301: HSRITIFGEE ETKEEEEVKT EEGEILEKAS PQEPRKIMTV GFPGINAPIP ENADSWLWEQ RNSNTGHTNY HNHLRPQYEM GPLGIQLSSS FPPMHGIRYD
401: HRFGL
101: LQQWSEWEAE QNSLSEDQEQ VLEAGDETYF PALRVGLQKT SSVSFWFDYQ TGHSSSKKSV PVESSTTPLY NRGFTIGLDS GSNNVEGGLE IIDDPPRCFN
201: CGAYSHSIRE CPRPFDRSAV SNARRQHKRK RNQTPGSRLP SRYYQSLQRG KYDGLKPGSL DAETRKLLGL KELDPPPWLN RMREIGYPPG YFAVEEDDDD
301: HSRITIFGEE ETKEEEEVKT EEGEILEKAS PQEPRKIMTV GFPGINAPIP ENADSWLWEQ RNSNTGHTNY HNHLRPQYEM GPLGIQLSSS FPPMHGIRYD
401: HRFGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.