CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034014.1-P	Field mustard	nucleus	96.56	95.68
CDY46038	Canola	nucleus	91.74	90.5
AT1G67210.1	Thale cress	nucleus	68.58	73.83
CDX67412	Canola	nucleus	56.42	50.83
CDY49079	Canola	nucleus	58.03	48.01
KRH18266	Soybean	nucleus	45.87	38.68
KRG93782	Soybean	nucleus	45.87	38.54
Os06t0495700-00	Rice	nucleus	40.83	36.63
Solyc03g045060.2.1	Tomato	nucleus	43.58	35.85
EES05262	Sorghum	nucleus	42.66	35.84
GSMUA_Achr5P23660_001	Banana	nucleus	37.84	35.26
Zm00001d050793_P001	Maize	nucleus	43.58	34.99
VIT_14s0083g00220.t01	Wine grape	nucleus	47.48	32.91
TraesCS4B01G002400.2	Wheat	nucleus	40.37	31.54
TraesCS4D01G000900.2	Wheat	nucleus	39.68	29.98
PGSC0003DMT400008672	Potato	nucleus	12.16	29.94
HORVU4Hr1G000670.1	Barley	nucleus	39.68	29.73
KRG93822	Soybean	nucleus	36.47	29.34
TraesCS4A01G000900.1	Wheat	nucleus	38.99	29.11

Protein Annotations

MapMan:16.8.1.2.3.3	GO:A0A078FKF3	UniProt:A0A078FKF3	EnsemblPlants:CDY12628	ProteinID:CDY12628	ProteinID:CDY12628.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00070133001	InterPro:IPR001878
PFAM:PF04046	PFscan:PS50158	InterPro:PSP_pro-rich	PANTHER:PTHR13316	PANTHER:PTHR13316:SF0	SMART:SM00343
SMART:SM00581	SUPFAM:SSF57756	UniParc:UPI0004EF4D0A	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg

Description

BnaA02g12960DBnaA02g12960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKF3]

Coordinates

chrLK032025:+:332141..334284

Molecular Weight (calculated)

48818.1 Da

IEP (calculated)

4.601

GRAVY (calculated)

-0.830

Length

436 amino acids

Sequence
(BLAST)

001: MAADSSFSGL EGQRDEHNSD MEEDMDLTED DFRNVSGQFS RDTSIAEVKD AVTVSAETVK VDVSSKSGVK RARTISEENQ PSVHVTYTHL TRASKQKLES
101: LLQQWSEWEA EQTSLLCQSD QDQEPALESG EDTYFPALRV GLQKTSSVSF WFDCKTGQDS LKEFVPVESS TTPLYNRKFA IGLDSTVGSS NVEGGLEIID
201: DDPPRCFNCG AYSHSMRECP KPFDRSAVSI ARRQHKSKRN QSSRLIPSRY YKSAQGGKYD GLKPGSLDPE TRQVLGLGEL DPPPWLHRMR EIGYPPGYLA
301: VEEDHLSGIT IFDEEETEPP EEGEVKAEDG EILEVAASSS EPPQMKMTVE FPGINAPIPE NADVWLWQQR KNTGHGYNHD QHYRGVMGPP GVELSSSYPP
401: RYGGIRYDHG FGSIARSPGS ESERRYYYSQ YDQNLR

Best Arabidopsis Sequence Match ( AT1G67210.1 )
(BLAST)

001: MAASSGSGLE AEEGEISIDM EEDMDLTEDD FRNVSGQFSG QASIVEVGDA VDVRVETVKV DVSSKSGVKR ARTISLEQQP SVHVTYKHLT RDSKQKLESL
101: LQQWSEWEAE QNSLSEDQEQ VLEAGDETYF PALRVGLQKT SSVSFWFDYQ TGHSSSKKSV PVESSTTPLY NRGFTIGLDS GSNNVEGGLE IIDDPPRCFN
201: CGAYSHSIRE CPRPFDRSAV SNARRQHKRK RNQTPGSRLP SRYYQSLQRG KYDGLKPGSL DAETRKLLGL KELDPPPWLN RMREIGYPPG YFAVEEDDDD
301: HSRITIFGEE ETKEEEEVKT EEGEILEKAS PQEPRKIMTV GFPGINAPIP ENADSWLWEQ RNSNTGHTNY HNHLRPQYEM GPLGIQLSSS FPPMHGIRYD
401: HRFGL

Arabidopsis Description

At1g67210 [Source:UniProtKB/TrEMBL;Acc:Q8LD15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.