Factsheet for Solyc06g054580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g110190.2.1
Solyc03g045060.2.1
Solyc03g082980.2.1
Solyc03g115070.1.1
Solyc04g015010.2.1
Solyc04g077210.2.1
Solyc10g054080.1.1
Solyc11g012660.1.1
Solyc11g044880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39100.1	Solyc04g077210.2.1	AT4G08150.1	21798944
AT2G39100.1	Solyc04g015010.2.1	AT4G17220.1	21798944
AT2G39100.1	Solyc11g012660.1.1	AT4G17220.1	21798944
AT2G39100.1	Solyc01g110190.2.1	AT4G39050.1	21798944
AT2G39100.1	Solyc10g054080.1.1	AT4G39050.1	21798944
AT2G39100.1	Solyc11g044880.1.1	AT4G39050.1	21798944
AT2G39100.1	Solyc03g045060.2.1	AT5G38600.1	21798944
AT2G39100.1	Solyc03g082980.2.1	AT5G53060.1	21798944
AT2G39100.1	Solyc03g115070.1.1	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079098	Potato	mitochondrion	92.28	92.28
CDY18354	Canola	nucleus	42.28	43.56
AT2G39100.1	Thale cress	plastid	46.69	42.91
VIT_05s0020g01720.t01	Wine grape	plastid	52.94	42.35
Bra017091.1-P	Field mustard	nucleus	43.38	41.4
CDX93287	Canola	cytosol, plastid	43.38	37.94

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR001841	InterPro:IPR002483	InterPro:IPR013083	UniProt:K4C6E4	PFAM:PF01480
PFAM:PF13639	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF95	InterPro:PWI_dom
SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc06g054580.2	EnsemblPlants:Solyc06g054580.2.1	UniParc:UPI0002765D6B	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:37318386..37321080

Molecular Weight (calculated)

32239.7 Da

IEP (calculated)

9.613

GRAVY (calculated)

-0.522

Length

272 amino acids

Sequence
(BLAST)

001: MDSRFKEIAA AVARQSCPIC LCQIHHRSAA VVIPCMHAYC IVCIRRWSDV KRKCPLCNAD FDSWFSRISF SSRTFQKEQL SARNETKKLH SGFVPSRLRD
101: RLADRRVIRR RREELNTFGS RTRPFPRRRS FDHKGALNPD DITRRIILWR SSIYEERLQA VPFSSKNCLM QHMDNRSTKE KMLQRIEPWI RRELQAILGD
201: PDPSIIVHVA TSLFITENTH STQWCDRNEF LAPLRPFLHE RAEVFWHELR CFAESPFSMQ TYDTVVEYYS LD

Best Arabidopsis Sequence Match ( AT2G39100.1 )
(BLAST)

001: MPPLPSSTAP SSSRHLRSPE SIAKFAGRAI FPALQGKSCP ICLENLTERR SAAVITVCKH GYCLACIRKW SSFKRNCPLC NTRFDSWFIV SDFASRKYHK
101: EQLPILRDRE TLTYHRNNPS DRRRIIQRSR DVLENSSSRS RPLPWRRSFG RPGSVPDSVI FQRKLQWRAS IYTKQLRAVR LHSRRLELSL AVNDYTKAKI
201: TERIEPWIRR ELQAVLGDPD PSVIVHFASA LFIKRLEREN NRQTGQTGML VEDEVSSLRK FLSDKVDIFW HELRCFAESI LTMETYDAVV EYNEVE

Arabidopsis Description

Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ73]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.