Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 5
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g054580.2.1 | Tomato | nucleus | 92.28 | 92.28 |
| AT2G39100.1 | Thale cress | plastid | 48.53 | 44.59 |
| CDY18354 | Canola | nucleus | 42.65 | 43.94 |
| VIT_05s0020g01720.t01 | Wine grape | plastid | 52.21 | 41.76 |
| Bra017091.1-P | Field mustard | nucleus | 43.75 | 41.75 |
| CDX93287 | Canola | cytosol, plastid | 44.12 | 38.59 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400079098 | EnsemblPlantsGene:PGSC0003DMG400030783 | EntrezGene:102580886 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF95 | PFAM:PF13639 |
| PFscan:PS50089 | PGSC:PGSC0003DMG400030783 | RefSeq:XP_006356698.1 | ScanProsite:PS00518 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI000295613A | UniProt:M1D182 | MapMan:35.2 | : | : |
Description
RING zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030783]
Coordinates
chr6:+:40924475..40928010
Molecular Weight (calculated)
32040.6 Da
IEP (calculated)
10.077
GRAVY (calculated)
-0.460
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSRFKVITT AVARKSCPIC LCRLHHRSAA VVIPCMHAYC IVCIRRWSDV KRKCPLCNAD FDSWFSRISF SSRTFHKEQL SARNETKKLH SGFVPSRLRD
101: RLADRRAITR RREELSTFGS RTRPFPKRRS FDRNGALNPD DITRRIILWR SSIYEERLQA VPFSSKNCLI QHMDNRSTKE KMLQRIEPWI RRELQAILGD
201: PDPSIIVHVA TSLFITENTH SIQRCARNDF LAPLRPFLHE HAEIFWHELR CFAESPLSMQ TYDTVVEYYS LD
101: RLADRRAITR RREELSTFGS RTRPFPKRRS FDRNGALNPD DITRRIILWR SSIYEERLQA VPFSSKNCLI QHMDNRSTKE KMLQRIEPWI RRELQAILGD
201: PDPSIIVHVA TSLFITENTH SIQRCARNDF LAPLRPFLHE HAEIFWHELR CFAESPLSMQ TYDTVVEYYS LD
001: MPPLPSSTAP SSSRHLRSPE SIAKFAGRAI FPALQGKSCP ICLENLTERR SAAVITVCKH GYCLACIRKW SSFKRNCPLC NTRFDSWFIV SDFASRKYHK
101: EQLPILRDRE TLTYHRNNPS DRRRIIQRSR DVLENSSSRS RPLPWRRSFG RPGSVPDSVI FQRKLQWRAS IYTKQLRAVR LHSRRLELSL AVNDYTKAKI
201: TERIEPWIRR ELQAVLGDPD PSVIVHFASA LFIKRLEREN NRQTGQTGML VEDEVSSLRK FLSDKVDIFW HELRCFAESI LTMETYDAVV EYNEVE
101: EQLPILRDRE TLTYHRNNPS DRRRIIQRSR DVLENSSSRS RPLPWRRSFG RPGSVPDSVI FQRKLQWRAS IYTKQLRAVR LHSRRLELSL AVNDYTKAKI
201: TERIEPWIRR ELQAVLGDPD PSVIVHFASA LFIKRLEREN NRQTGQTGML VEDEVSSLRK FLSDKVDIFW HELRCFAESI LTMETYDAVV EYNEVE
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ73]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.