CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97711
KRG98876
KRH03947
KRH14452
KRH14933
KRH31163
KRH46090
KRH57220
KRH73205
KRH73702

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67620.1	KRG98876	AT2G42790.1	21798944
AT5G67620.1	KRH14452	AT2G42790.1	21798944
AT5G67620.1	KRH46090	AT2G42790.1	21798944
AT5G67620.1	KRH73702	AT2G42790.1	21798944
AT5G67620.1	KRG97711	AT3G08530.1	21798944
AT5G67620.1	KRH14933	AT3G08530.1	21798944
AT5G67620.1	KRH31163	AT3G08530.1	21798944
AT5G67620.1	KRH73205	AT3G08530.1	21798944
AT5G67620.1	KRH03947	AT4G24840.1	21798944
AT5G67620.1	KRH57220	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04405	Soybean	cytosol	83.89	84.83
PGSC0003DMT400055171	Potato	cytosol	61.67	62.71
VIT_00s0802g00020.t01	Wine grape	cytosol	61.11	61.11
Solyc02g092240.2.1	Tomato	cytosol	56.11	57.71
CDY18668	Canola	nucleus	52.78	53.07
CDX81304	Canola	nucleus	53.33	52.17
CDY37844	Canola	nucleus	51.67	51.96
Bra037835.1-P	Field mustard	nucleus	52.22	51.93
AT5G67620.1	Thale cress	nucleus	51.11	50.55
CDY36508	Canola	nucleus	46.11	50.3
CDY43585	Canola	nucleus	48.89	50.0
Bra024434.1-P	Field mustard	nucleus	45.56	49.7
Bra031842.1-P	Field mustard	nucleus	51.67	48.69
CDY08733	Canola	nucleus	44.44	48.48
GSMUA_Achr9P18980_001	Banana	nucleus	26.67	46.6
GSMUA_Achr6P24780_001	Banana	cytosol	46.11	41.92
GSMUA_Achr8P31090_001	Banana	cytosol	44.44	38.46
Zm00001d048162_P001	Maize	nucleus	44.44	38.28
Zm00001d028118_P001	Maize	cytosol	45.56	37.79
KRH57030	Soybean	cytosol	37.22	37.22
KRH69484	Soybean	cytosol	35.0	36.63
GSMUA_Achr7P26140_001	Banana	cytosol	35.56	36.57
TraesCS4B01G260900.1	Wheat	cytosol	45.0	36.32
Os03t0200200-01	Rice	cytosol	43.33	36.28
KRH03351	Soybean	cytosol	36.67	36.26
TraesCS4A01G039700.1	Wheat	cytosol	45.0	35.84
GSMUA_Achr1P22560_001	Banana	cytosol	40.0	35.64
KRH74672	Soybean	cytosol	33.89	35.47
TraesCS4D01G260500.1	Wheat	cytosol	44.44	35.4
KXG39943	Sorghum	cytosol	43.33	34.98
GSMUA_Achr7P26120_001	Banana	cytosol	38.33	34.5
KRH63480	Soybean	cytosol	32.78	34.1
KRG99257	Soybean	cytosol	32.78	33.91
KRH45741	Soybean	cytosol	32.78	33.52
KRH54436	Soybean	cytosol	33.33	33.15
Os10t0352000-01	Rice	cytosol	26.11	28.48

Protein Annotations

EMBL:ACUP02003204	EnsemblPlants:KRH58136	EnsemblPlantsGene:GLYMA_05G106700	EntrezGene:100780653	InterPro:DUF4228_plant	PANTHER:PTHR33413
PANTHER:PTHR33413:SF1	PFAM:PF14009	ProteinID:KRH58136	ProteinID:KRH58136.1	SEG:seg	UniParc:UPI000233A3F6
UniProt:I1K2F1	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:28363717..28368425

Molecular Weight (calculated)

19573.3 Da

IEP (calculated)

10.109

GRAVY (calculated)

-0.569

Length

180 amino acids

Sequence
(BLAST)

001: MGNCQAAEAA TVVIQHPGNK IERVYWSLSA HEVMNSNPGH YVALVVSSPT LKAENGAPMK QLKLLRPDDT LHIGQVYRLI SFEDVLKEFA SKKCGKLGKL
101: LKETGSHGIQ MKHKDSRATN PSPNSKTEFG SIKVEQEIQR MGNHGSSSSN NNNNKGVGRH FVGSGGQWRP ALQSIAEIGT

Best Arabidopsis Sequence Match ( AT5G67620.1 )
(BLAST)

001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS

Arabidopsis Description

At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.