Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025514_P001 | Maize | nucleus | 84.68 | 83.16 |
| EES12241 | Sorghum | nucleus | 86.49 | 81.62 |
| TraesCS2B01G332100.1 | Wheat | nucleus, plastid | 69.35 | 64.18 |
| TraesCS2D01G311800.1 | Wheat | nucleus, plastid | 68.83 | 64.16 |
| TraesCS2A01G313300.1 | Wheat | nucleus, plastid | 68.57 | 63.46 |
| Os04t0445600-00 | Rice | nucleus | 67.79 | 62.59 |
| HORVU2Hr1G077940.1 | Barley | cytosol, nucleus, plastid | 34.03 | 58.48 |
| Zm00001d016876_P001 | Maize | nucleus, plastid | 54.29 | 51.99 |
| Zm00001d010753_P001 | Maize | nucleus | 38.7 | 45.43 |
| GSMUA_Achr8P23650_001 | Banana | nucleus | 32.73 | 36.95 |
| CDY33246 | Canola | nucleus | 29.09 | 36.6 |
| CDY39101 | Canola | nucleus, plastid | 28.83 | 36.39 |
| CDY39099 | Canola | nucleus | 29.87 | 36.28 |
| VIT_09s0002g00720.t01 | Wine grape | nucleus | 34.29 | 36.26 |
| KRH47662 | Soybean | nucleus, plastid | 34.55 | 36.14 |
| Bra021536.1-P | Field mustard | nucleus | 28.57 | 35.95 |
| KRH06239 | Soybean | nucleus | 34.55 | 35.95 |
| Bra021534.1-P | Field mustard | nucleus, plastid | 28.57 | 35.48 |
| GSMUA_Achr9P14340_001 | Banana | nucleus | 32.99 | 35.08 |
| Solyc03g122030.1.1 | Tomato | nucleus | 31.95 | 33.88 |
| Zm00001d011571_P001 | Maize | cytosol | 27.27 | 33.33 |
| CDY61477 | Canola | nucleus, plastid | 25.97 | 33.22 |
| PGSC0003DMT400088401 | Potato | nucleus, plastid | 31.69 | 32.71 |
| Zm00001d043902_P001 | Maize | nucleus | 27.01 | 32.7 |
| Bra037960.1-P | Field mustard | nucleus, plastid | 25.45 | 32.56 |
| CDY02487 | Canola | nucleus, plastid | 25.97 | 32.47 |
| GSMUA_Achr3P05880_001 | Banana | nucleus | 33.77 | 32.18 |
| CDX75751 | Canola | nucleus | 30.65 | 31.72 |
| Zm00001d030350_P001 | Maize | nucleus | 16.88 | 30.95 |
| Zm00001d038994_P001 | Maize | cytosol | 27.53 | 30.9 |
| CDY08216 | Canola | nucleus | 25.97 | 30.49 |
| Bra014370.1-P | Field mustard | nucleus | 26.23 | 30.15 |
| AT3G14180.1 | Thale cress | nucleus | 33.77 | 29.35 |
| CDY51405 | Canola | nucleus | 9.35 | 28.35 |
| CDY26148 | Canola | nucleus, plastid | 25.71 | 27.73 |
| AT1G54060.1 | Thale cress | nucleus | 26.75 | 26.89 |
| Bra030909.1-P | Field mustard | nucleus | 8.57 | 25.78 |
| Zm00001d042917_P001 | Maize | golgi, plasma membrane | 41.82 | 24.25 |
| CDY33093 | Canola | cytosol, plastid | 25.71 | 22.65 |
| Zm00001d011730_P001 | Maize | nucleus, plastid | 19.22 | 21.14 |
Protein Annotations
| EnsemblPlants:Zm00001d003549_P001 | EnsemblPlants:Zm00001d003549_T001 | EnsemblPlantsGene:Zm00001d003549 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF12 |
| PFAM:PF13837 | ProteinID:ONM17143.1 | SEG:seg | UniParc:UPI0008424928 | UniProt:A0A1D6E9S2 | MapMan:15.5.20 |
Description
Trihelix-transcription factor 15Trihelix transcription factor ASIL2
Coordinates
chr2:+:47683309..47684466
Molecular Weight (calculated)
40981.2 Da
IEP (calculated)
7.221
GRAVY (calculated)
-0.783
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDDDDMSPS SSPSPPSSAL PVDGPVTVAA APPGATMVVA LPIHRTAASL YASAAAAGGG GGGREDAWSD GATSALIDAW GERFVALGRG SLRHPQWQEV
101: ADAVSSRDGY SKGPRSDVQC KNRIDTLKKY KVERAKPVSA WQFFDRLDFL LAPTYGNKPG SSGGGGGGHN SNSRGQMPSA LRVGFPQRSR TPLMPAAKRR
201: APSPEPSVSS DGFSPLPALP PAVNGKRKRP DEGRPDGGSG DDRARGLQEL AHAIRRLGEA YERVEAAKLE QAAEMERQRM DFAQELESQR VQFFLDAQME
301: LTQARNHVSP ASAARPAAGG SSRRTSVVTD TGGSSNHHSR YRISHGDMHR HAPRSHYQPQ YHGNNHAGAG AGAASEEEDD YEEES
101: ADAVSSRDGY SKGPRSDVQC KNRIDTLKKY KVERAKPVSA WQFFDRLDFL LAPTYGNKPG SSGGGGGGHN SNSRGQMPSA LRVGFPQRSR TPLMPAAKRR
201: APSPEPSVSS DGFSPLPALP PAVNGKRKRP DEGRPDGGSG DDRARGLQEL AHAIRRLGEA YERVEAAKLE QAAEMERQRM DFAQELESQR VQFFLDAQME
301: LTQARNHVSP ASAARPAAGG SSRRTSVVTD TGGSSNHHSR YRISHGDMHR HAPRSHYQPQ YHGNNHAGAG AGAASEEEDD YEEES
001: METTPETQSK THRLPAGRED WWSEDATATL IEAWGDRYVN LNRGNLRQND WKEVADAVNS SHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PLSNWCFFDR
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
Arabidopsis Description
AT3g11100/F11B9_105 [Source:UniProtKB/TrEMBL;Acc:Q8VZI9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.