CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88163	Canola	mitochondrion	88.37	86.86
Bra009824.1-P	Field mustard	mitochondrion	95.35	85.42
CDY05479	Canola	mitochondrion	86.05	80.0
CDY19812	Canola	mitochondrion	83.14	79.89
CDX87096	Canola	mitochondrion	83.72	79.56
CDY05373	Canola	mitochondrion	84.88	79.35
AT5G25190.1	Thale cress	mitochondrion	81.4	77.35
GSMUA_Achr7P19320_001	Banana	nucleus	55.81	62.75
KRH09667	Soybean	mitochondrion, nucleus	63.95	61.8
VIT_04s0008g06000.t01	Wine grape	mitochondrion	66.28	60.96
KRH47384	Soybean	mitochondrion, nucleus	67.44	59.79
KRH44522	Soybean	mitochondrion	66.86	58.97
OQU85888	Sorghum	mitochondrion	52.91	58.71
Zm00001d052026_P001	Maize	mitochondrion	51.74	57.79
PGSC0003DMT400067218	Potato	mitochondrion	63.95	56.12
GSMUA_Achr5P22840_001	Banana	mitochondrion, nucleus	52.33	55.9
TraesCS6A01G360300.1	Wheat	mitochondrion	52.91	54.82
Solyc06g065820.2.1	Tomato	mitochondrion	64.53	54.41
Os02t0797100-00	Rice	mitochondrion	54.07	54.07
TraesCS7D01G147200.1	Wheat	mitochondrion, nucleus	51.16	53.99
TraesCS7B01G048100.1	Wheat	mitochondrion	50.58	53.7
TraesCS7D01G147100.1	Wheat	mitochondrion, nucleus	51.16	53.66
TraesCS6D01G343800.1	Wheat	mitochondrion	52.91	53.53
TraesCS6B01G393200.1	Wheat	mitochondrion	52.91	53.53
TraesCS7A01G145800.1	Wheat	mitochondrion, nucleus	51.16	53.01
GSMUA_Achr10P...	Banana	mitochondrion	52.91	51.7
Zm00001d045120_P001	Maize	mitochondrion	50.0	50.89
Os06t0181700-01	Rice	mitochondrion	51.74	50.0
Zm00001d035835_P001	Maize	mitochondrion	49.42	49.13
KRH23632	Soybean	nucleus	63.95	48.67
EER87969	Sorghum	mitochondrion	49.42	46.96
GSMUA_Achr7P16060_001	Banana	mitochondrion	56.98	41.53
CDX83982	Canola	nucleus	43.6	41.44
CDX96845	Canola	nucleus	43.6	41.44
CDY36551	Canola	nucleus	44.19	41.3
CDY39637	Canola	nucleus	44.77	40.31
CDY67940	Canola	nucleus	42.44	38.42
CDY19805	Canola	nucleus	39.53	36.96
CDY68539	Canola	mitochondrion, nucleus	39.53	36.56
CDX88176	Canola	nucleus	40.12	36.51
CDX69779	Canola	nucleus	39.53	36.36
CDX80507	Canola	nucleus	39.53	35.98
CDX87089	Canola	nucleus	40.12	35.03
CDY08817	Canola	mitochondrion	21.51	30.08
CDY14636	Canola	nucleus, plastid	30.81	21.2
CDX90362	Canola	nucleus	31.4	20.93
CDY21346	Canola	nucleus	31.4	20.77
CDY38238	Canola	nucleus	31.4	20.77
CDX69387	Canola	nucleus	30.81	20.08
CDY39455	Canola	nucleus	31.4	20.07
CDY31606	Canola	nucleus	30.23	20.0
CDX72672	Canola	nucleus	29.65	19.84
CDX89442	Canola	plastid	26.74	19.74
CDY42004	Canola	nucleus	30.23	19.7
CDX87480	Canola	nucleus	30.81	19.41
CDY25578	Canola	plastid	26.16	19.07
HORVU7Hr1G029870.1	Barley	mitochondrion	25.58	18.57
CDY33983	Canola	nucleus	29.65	18.55
CDY31284	Canola	nucleus	29.07	17.99
CDY46525	Canola	nucleus	29.07	17.48
CDY71425	Canola	nucleus	29.65	17.41
CDY08816	Canola	nucleus	28.49	17.38
CDY14542	Canola	nucleus	28.49	17.38
CDY26847	Canola	nucleus	31.4	17.36
CDX68032	Canola	nucleus	31.98	17.13
CDX88414	Canola	nucleus	31.4	16.82
CDY47850	Canola	nucleus	29.65	16.72
CDX73367	Canola	nucleus	30.81	16.51
CDX79244	Canola	nucleus	31.98	16.47
CDY48227	Canola	nucleus	30.23	16.2
CDY58717	Canola	nucleus	22.09	14.56
CDY29884	Canola	nucleus	22.09	14.56
CDX81987	Canola	nucleus	26.16	14.38
CDY69209	Canola	nucleus	25.58	14.15
CDX97423	Canola	nucleus	22.67	13.98
CDY14255	Canola	nucleus	22.09	13.77
CDY53558	Canola	nucleus	27.91	13.75
CDY19002	Canola	nucleus	22.09	12.97
CDX89202	Canola	nucleus	22.09	12.97
CDY08372	Canola	nucleus	9.88	7.23

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	GO:A0A078JJL0	UniProt:A0A078JJL0	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDY65537	ProteinID:CDY65537	ProteinID:CDY65537.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00046775001	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF4
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0004EF2856	SEG:seg	:	:

Description

BnaCnng47540DBnaCnng47540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJL0]

Coordinates

chrLK034829:+:7602..8378

Molecular Weight (calculated)

19612.3 Da

IEP (calculated)

9.812

GRAVY (calculated)

-0.649

Length

172 amino acids

Sequence
(BLAST)

001: MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR TNFPYNPNAV PSSSSKLLSA TLTAKLHKCY MASLQLTKQT
101: QTQSQAQAQN PRLRSLSLPD TDSVMNMTAN GINYNRGGNF RPLEEDHIEQ MIEELRHYGS IEFCSVLPTQ SM

Best Arabidopsis Sequence Match ( AT5G25190.1 )
(BLAST)

001: MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR TNFPYNPNAI PTSSSKLLSA TLTAKLHKCY MASLQMTKQT
101: QTQTQTQTAR SQSADSDGVT ANESHLNRGV TETTEIKWED GNANMQQNFR PLEEDHIEQM IEELLHYGSI ELCSVLPTQT L

Arabidopsis Description

ERF003Ethylene-responsive transcription factor ERF003 [Source:UniProtKB/Swiss-Prot;Acc:Q94AW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.