Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008985.1-P | Field mustard | nucleus | 97.31 | 96.79 |
| CDX69779 | Canola | nucleus | 97.31 | 96.79 |
| AT5G11190.1 | Thale cress | mitochondrion, nucleus | 90.86 | 89.42 |
| Solyc06g053240.2.1 | Tomato | nucleus | 13.98 | 83.87 |
| CDY19805 | Canola | nucleus | 63.44 | 64.13 |
| CDX88176 | Canola | nucleus | 63.98 | 62.96 |
| CDX80507 | Canola | nucleus | 63.44 | 62.43 |
| VIT_04s0008g05440.t01 | Wine grape | nucleus | 63.44 | 60.82 |
| CDX87089 | Canola | nucleus | 63.98 | 60.41 |
| CDX83982 | Canola | nucleus | 55.91 | 57.46 |
| CDX96845 | Canola | nucleus | 55.91 | 57.46 |
| CDY36551 | Canola | nucleus | 56.45 | 57.07 |
| CDY39637 | Canola | nucleus | 57.53 | 56.02 |
| CDY67940 | Canola | nucleus | 55.38 | 54.21 |
| KRH05157 | Soybean | nucleus | 56.99 | 53.27 |
| PGSC0003DMT400077702 | Potato | nucleus | 54.3 | 50.0 |
| CDY65537 | Canola | mitochondrion | 36.56 | 39.53 |
| CDY19812 | Canola | mitochondrion | 37.1 | 38.55 |
| CDX88163 | Canola | mitochondrion | 36.02 | 38.29 |
| CDX87096 | Canola | mitochondrion | 37.1 | 38.12 |
| CDY05479 | Canola | mitochondrion | 37.1 | 37.3 |
| CDY05373 | Canola | mitochondrion | 36.56 | 36.96 |
| CDY08817 | Canola | mitochondrion | 22.04 | 33.33 |
| CDX89442 | Canola | plastid | 26.88 | 21.46 |
| CDY25578 | Canola | plastid | 26.88 | 21.19 |
| CDY14636 | Canola | nucleus, plastid | 26.88 | 20.0 |
| CDX87480 | Canola | nucleus | 27.96 | 19.05 |
| CDX69387 | Canola | nucleus | 26.88 | 18.94 |
| CDY38238 | Canola | nucleus | 26.34 | 18.85 |
| CDY31606 | Canola | nucleus | 26.34 | 18.85 |
| CDY21346 | Canola | nucleus | 26.34 | 18.85 |
| CDX72672 | Canola | nucleus | 25.81 | 18.68 |
| CDX90362 | Canola | nucleus | 25.81 | 18.6 |
| CDY42004 | Canola | nucleus | 26.34 | 18.56 |
| CDY31284 | Canola | nucleus | 27.42 | 18.35 |
| CDY14542 | Canola | nucleus | 27.42 | 18.09 |
| CDY39455 | Canola | nucleus | 25.81 | 17.84 |
| CDY71425 | Canola | nucleus | 27.96 | 17.75 |
| CDY46525 | Canola | nucleus | 26.88 | 17.48 |
| CDY33983 | Canola | nucleus | 25.81 | 17.45 |
| CDY08816 | Canola | nucleus | 26.34 | 17.38 |
| CDY47850 | Canola | nucleus | 27.96 | 17.05 |
| CDX68032 | Canola | nucleus | 28.49 | 16.51 |
| CDX88414 | Canola | nucleus | 27.96 | 16.2 |
| CDY58717 | Canola | nucleus | 22.58 | 16.09 |
| CDY26847 | Canola | nucleus | 26.88 | 16.08 |
| CDX79244 | Canola | nucleus | 28.49 | 15.87 |
| CDY29884 | Canola | nucleus | 22.04 | 15.71 |
| CDY14255 | Canola | nucleus | 23.12 | 15.58 |
| CDX97423 | Canola | nucleus | 22.04 | 14.7 |
| CDX89202 | Canola | nucleus | 23.12 | 14.68 |
| CDY48227 | Canola | nucleus | 25.27 | 14.64 |
| CDX73367 | Canola | nucleus | 25.27 | 14.64 |
| CDY19002 | Canola | nucleus | 22.58 | 14.33 |
| CDY53558 | Canola | nucleus | 25.81 | 13.75 |
| CDX81987 | Canola | nucleus | 22.04 | 13.1 |
| CDY69209 | Canola | nucleus | 21.51 | 12.86 |
| CDY08372 | Canola | nucleus | 9.68 | 7.66 |
Protein Annotations
| MapMan:15.5.7.1 | MapMan:21.9.3.1 | Gene3D:3.30.730.10 | GO:A0A078JP25 | UniProt:A0A078JP25 | InterPro:AP2/ERF-transcript_factor |
| InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY68539 | ProteinID:CDY68539 | ProteinID:CDY68539.1 | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00075408001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PIRSF:PIRSF038123 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 |
| PANTHER:PTHR31194:SF13 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EE17B6 | SEG:seg | : |
Description
BnaCnng59450DBnaCnng59450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JP25]
Coordinates
chrLK037518:-:366..1396
Molecular Weight (calculated)
21028.9 Da
IEP (calculated)
7.062
GRAVY (calculated)
-0.651
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MVHSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA LLMNGQNAKT NFPVVKSEKG SDNVHDANSP LTSPKSLSEL LNAKLRKSCK
101: DLTPSLTCLR LDTDSSHIGV WQKRAGSKTS PNWVMRLELG NVVNESAHEL GMKKQDVEKA EDVEEEANVD EDQLAMEMIE ELLNWS
101: DLTPSLTCLR LDTDSSHIGV WQKRAGSKTS PNWVMRLELG NVVNESAHEL GMKKQDVEKA EDVEEEANVD EDQLAMEMIE ELLNWS
001: MVHSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA LLMNGQNAKT NFPVVKSEEG SDHVKDVNSP LMSPKSLSEL LNAKLRKSCK
101: DLTPSLTCLR LDTDSSHIGV WQKRAGSKTS PTWVMRLELG NVVNESAVDL GLTTMNKQNV EKEEEEEEAI ISDEDQLAME MIEELLNWS
101: DLTPSLTCLR LDTDSSHIGV WQKRAGSKTS PTWVMRLELG NVVNESAVDL GLTTMNKQNV EKEEEEEEAI ISDEDQLAME MIEELLNWS
Arabidopsis Description
SHN2Ethylene-responsive transcription factor SHINE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN7]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.