Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31606 | Canola | nucleus | 90.66 | 89.62 |
| CDY42004 | Canola | nucleus | 89.49 | 87.12 |
| CDX69387 | Canola | nucleus | 88.33 | 85.98 |
| CDY39455 | Canola | nucleus | 88.33 | 84.39 |
| CDX90362 | Canola | nucleus | 82.88 | 82.56 |
| AT4G39780.1 | Thale cress | nucleus | 81.71 | 77.21 |
| CDX89442 | Canola | plastid | 52.53 | 57.94 |
| CDY25578 | Canola | plastid | 52.53 | 57.2 |
| CDY08817 | Canola | mitochondrion | 22.96 | 47.97 |
| CDY14542 | Canola | nucleus | 50.58 | 46.1 |
| CDY14636 | Canola | nucleus, plastid | 44.75 | 46.0 |
| CDY21346 | Canola | nucleus | 45.53 | 45.0 |
| CDY38238 | Canola | nucleus | 45.53 | 45.0 |
| CDX87480 | Canola | nucleus | 47.47 | 44.69 |
| CDY08816 | Canola | nucleus | 49.03 | 44.68 |
| CDY33983 | Canola | nucleus | 46.69 | 43.64 |
| Solyc04g054910.2.1 | Tomato | nucleus | 46.3 | 42.81 |
| CDY26847 | Canola | nucleus | 51.36 | 42.44 |
| CDY31284 | Canola | nucleus | 45.53 | 42.09 |
| KRG97594 | Soybean | nucleus | 49.81 | 41.42 |
| CDX68032 | Canola | nucleus | 50.97 | 40.81 |
| KRH31278 | Soybean | nucleus | 49.81 | 40.25 |
| CDX88414 | Canola | nucleus | 49.81 | 39.88 |
| CDX79244 | Canola | nucleus | 51.75 | 39.82 |
| PGSC0003DMT400053152 | Potato | nucleus | 50.97 | 35.41 |
| VIT_00s0662g00040.t01 | Wine grape | nucleus | 50.19 | 34.49 |
| CDY48227 | Canola | nucleus | 40.08 | 32.09 |
| CDX73367 | Canola | nucleus | 39.69 | 31.78 |
| CDY65537 | Canola | mitochondrion | 19.84 | 29.65 |
| CDX88163 | Canola | mitochondrion | 19.84 | 29.14 |
| CDY19812 | Canola | mitochondrion | 19.84 | 28.49 |
| CDX83982 | Canola | nucleus | 19.84 | 28.18 |
| CDX96845 | Canola | nucleus | 19.84 | 28.18 |
| CDX87096 | Canola | mitochondrion | 19.84 | 28.18 |
| CDY36551 | Canola | nucleus | 19.84 | 27.72 |
| CDY05373 | Canola | mitochondrion | 19.46 | 27.17 |
| CDY05479 | Canola | mitochondrion | 19.46 | 27.03 |
| CDY39637 | Canola | nucleus | 19.84 | 26.7 |
| CDY67940 | Canola | nucleus | 19.46 | 26.32 |
| CDX80507 | Canola | nucleus | 19.07 | 25.93 |
| CDX88176 | Canola | nucleus | 19.07 | 25.93 |
| CDY68539 | Canola | mitochondrion, nucleus | 18.68 | 25.81 |
| CDX69779 | Canola | nucleus | 18.68 | 25.67 |
| CDY19805 | Canola | nucleus | 18.29 | 25.54 |
| CDY46525 | Canola | nucleus | 28.4 | 25.52 |
| CDY71425 | Canola | nucleus | 28.79 | 25.26 |
| CDY14255 | Canola | nucleus | 26.46 | 24.64 |
| CDX97423 | Canola | nucleus | 26.46 | 24.37 |
| CDY29884 | Canola | nucleus | 24.51 | 24.14 |
| CDY47850 | Canola | nucleus | 28.4 | 23.93 |
| CDX87089 | Canola | nucleus | 18.29 | 23.86 |
| CDY53558 | Canola | nucleus | 32.3 | 23.78 |
| CDY58717 | Canola | nucleus | 24.12 | 23.75 |
| CDX89202 | Canola | nucleus | 26.85 | 23.55 |
| CDY19002 | Canola | nucleus | 26.85 | 23.55 |
| CDX81987 | Canola | nucleus | 26.85 | 22.04 |
| CDY69209 | Canola | nucleus | 26.07 | 21.54 |
| CDY08372 | Canola | nucleus | 10.51 | 11.49 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078C752 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX72672 |
| ProteinID:CDX72672 | ProteinID:CDX72672.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00100247001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EE84E3 | SEG:seg | : | : | : | : |
Description
BnaC07g46940D
Coordinates
chrLK031796:+:2623108..2624370
Molecular Weight (calculated)
28966.1 Da
IEP (calculated)
5.218
GRAVY (calculated)
-0.587
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIDMFNSS TDLSDPFKEE LMKVLKPSLP PVPNTIFCFN QTTPLGLNQL TPYQIHQIQN QLNQRRSTTI SNLSPKPVTM KSMTAQKLYR GVRQRHWGKW
101: VAEIRLPKNR TRLWLGTFDT AEEAAMAYDQ AAYKLRGELA RLNFPRTRRE CGYGGGDGRF KPLHPSVEAK LEAICQSSVK TEDLDLPCSE TELFPPKAEY
201: QESEFGSLRA DENSFSDESQ VGSSSPDSGF DEIGSFVLEK FPSVEIDWDA ISKLSES
101: VAEIRLPKNR TRLWLGTFDT AEEAAMAYDQ AAYKLRGELA RLNFPRTRRE CGYGGGDGRF KPLHPSVEAK LEAICQSSVK TEDLDLPCSE TELFPPKAEY
201: QESEFGSLRA DENSFSDESQ VGSSSPDSGF DEIGSFVLEK FPSVEIDWDA ISKLSES
001: MAAIDMFNSN TDPFQEELMK ALQPYTTNTD SSSPTYSNTV FGFNQTTSLG LNQLTPYQIH QIQNQLNQRR NIISPNLAPK PVPMKNMTAQ KLYRGVRQRH
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES
Arabidopsis Description
ERF060Ethylene-responsive transcription factor ERF060 [Source:UniProtKB/Swiss-Prot;Acc:O65665]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.