Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42004 | Canola | nucleus | 79.41 | 81.82 |
| CDX72672 | Canola | nucleus | 77.21 | 81.71 |
| Bra011833.1-P | Field mustard | nucleus | 82.72 | 81.52 |
| CDX69387 | Canola | nucleus | 78.68 | 81.06 |
| CDY31606 | Canola | nucleus | 77.21 | 80.77 |
| Bra017879.1-P | Field mustard | nucleus | 76.84 | 80.38 |
| CDY39455 | Canola | nucleus | 78.68 | 79.55 |
| CDX90362 | Canola | nucleus | 73.9 | 77.91 |
| Bra010657.1-P | Field mustard | nucleus | 73.53 | 77.52 |
| AT2G22200.1 | Thale cress | plastid | 57.35 | 59.77 |
| Solyc04g054910.2.1 | Tomato | nucleus | 48.53 | 47.48 |
| AT1G22190.1 | Thale cress | nucleus | 44.12 | 45.98 |
| KRG97594 | Soybean | nucleus | 51.47 | 45.31 |
| KRH31278 | Soybean | nucleus | 51.47 | 44.03 |
| AT5G65130.2 | Thale cress | nucleus | 44.85 | 43.73 |
| PGSC0003DMT400053152 | Potato | nucleus | 54.04 | 39.73 |
| AT1G78080.1 | Thale cress | nucleus | 47.43 | 38.62 |
| VIT_00s0662g00040.t01 | Wine grape | nucleus | 52.57 | 38.24 |
| AT1G36060.1 | Thale cress | nucleus | 37.5 | 32.48 |
| AT5G25190.1 | Thale cress | mitochondrion | 19.49 | 29.28 |
| AT1G15360.1 | Thale cress | nucleus | 19.49 | 26.63 |
| AT1G64380.1 | Thale cress | nucleus | 31.62 | 25.67 |
| AT5G25390.2 | Thale cress | nucleus | 16.91 | 24.34 |
| AT5G11190.1 | Thale cress | mitochondrion, nucleus | 16.91 | 24.34 |
| AT4G28140.1 | Thale cress | nucleus | 23.9 | 22.26 |
| AT4G13620.1 | Thale cress | nucleus | 31.62 | 22.16 |
| AT2G20880.1 | Thale cress | nucleus | 26.84 | 21.73 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | EntrezGene:830136 | ProteinID:AEE87118.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| ArrayExpress:AT4G39780 | EnsemblPlantsGene:AT4G39780 | RefSeq:AT4G39780 | TAIR:AT4G39780 | RefSeq:AT4G39780-TAIR-G | EnsemblPlants:AT4G39780.1 |
| TAIR:AT4G39780.1 | EMBL:AY560850 | Unigene:At.2297 | EMBL:BT025719 | ProteinID:CAA18764.1 | ProteinID:CAB80641.1 |
| InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009873 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | RefSeq:NP_195688.1 |
| UniProt:O65665 | PFAM:PF00847 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025281 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI000009FBF4 | SEG:seg | : | : | : | : |
Description
ERF060Ethylene-responsive transcription factor ERF060 [Source:UniProtKB/Swiss-Prot;Acc:O65665]
Coordinates
chr4:-:18457906..18459257
Molecular Weight (calculated)
30952.9 Da
IEP (calculated)
4.598
GRAVY (calculated)
-0.655
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIDMFNSN TDPFQEELMK ALQPYTTNTD SSSPTYSNTV FGFNQTTSLG LNQLTPYQIH QIQNQLNQRR NIISPNLAPK PVPMKNMTAQ KLYRGVRQRH
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.