Factsheet for AT5G25390.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g053240.2.1	Tomato	nucleus	14.29	87.1
CDY19805	Canola	nucleus	80.42	82.61
Bra036543.1-P	Field mustard	nucleus	79.37	81.97
CDX88176	Canola	nucleus	80.95	80.95
CDX80507	Canola	nucleus	80.95	80.95
CDX87089	Canola	nucleus	80.42	77.16
Bra009837.1-P	Field mustard	mitochondrion, nucleus	67.72	75.29
AT5G11190.1	Thale cress	mitochondrion, nucleus	66.14	66.14
VIT_04s0008g05440.t01	Wine grape	nucleus	60.85	59.28
KRH05157	Soybean	nucleus	57.14	54.27
AT1G15360.1	Thale cress	nucleus	55.03	52.26
PGSC0003DMT400077702	Potato	nucleus	54.5	50.99
AT5G25190.1	Thale cress	mitochondrion	36.51	38.12
AT1G22190.1	Thale cress	nucleus	26.45	19.16
AT2G22200.1	Thale cress	plastid	25.93	18.77
AT4G39780.1	Thale cress	nucleus	24.34	16.91
AT5G65130.2	Thale cress	nucleus	24.87	16.85
AT1G36060.1	Thale cress	nucleus	27.51	16.56
AT1G78080.1	Thale cress	nucleus	28.04	15.87
AT1G64380.1	Thale cress	nucleus	28.04	15.82
AT4G28140.1	Thale cress	nucleus	22.22	14.38
AT2G20880.1	Thale cress	nucleus	22.22	12.5
AT4G13620.1	Thale cress	nucleus	24.34	11.86

Protein Annotations

MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	EntrezGene:832611	UniProt:A0A178USD7	EMBL:AC006258
ProteinID:AED93434.1	ProteinID:AED93435.1	EMBL:AK118780	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ArrayExpress:AT5G25390	EnsemblPlantsGene:AT5G25390	RefSeq:AT5G25390	TAIR:AT5G25390	RefSeq:AT5G25390-TAIR-G	EnsemblPlants:AT5G25390.2
TAIR:AT5G25390.2	Unigene:At.19636	EMBL:BT005461	EMBL:BX834028	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009873
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	RefSeq:NP_197921.1	RefSeq:NP_851073.1	ProteinID:OAO96400.1
PFAM:PF00847	PIRSF:PIRSF038123	PO:PO:0000115	PO:PO:0000230	PO:PO:0000293	PO:PO:0001185
PO:PO:0005059	PO:PO:0007611	PO:PO:0007616	PO:PO:0009009	PO:PO:0009029	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009052	PO:PO:0020123	PO:PO:0025022	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF13	UniProt:Q3E958	Symbol:SHN2	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0000162592	:	:	:	:

Description

SHN3SHN3 [Source:UniProtKB/TrEMBL;Acc:A0A178USD7]

Coordinates

chr5:+:8820458..8822062

Molecular Weight (calculated)

21255.4 Da

IEP (calculated)

10.185

GRAVY (calculated)

-0.633

Length

189 amino acids

Sequence
(BLAST)

001: MVHSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE TAARAYDQAA VLMNGQSAKT NFPVIKSNGS NSLEINSALR SPKSLSELLN AKLRKNCKDQ
101: TPYLTCLRLD NDSSHIGVWQ KRAGSKTSPN WVKLVELGDK VNARPGGDIE TNKMKVRNED VQEDDQMAMQ MIEELLNWTC PGSGSIAQV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.