Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14542 | Canola | nucleus | 70.61 | 69.86 |
| CDY08816 | Canola | nucleus | 70.61 | 69.86 |
| Bra024358.1-P | Field mustard | nucleus | 70.61 | 69.86 |
| CDY33983 | Canola | nucleus | 68.82 | 69.82 |
| Bra031880.1-P | Field mustard | nucleus | 68.82 | 69.31 |
| CDY31284 | Canola | nucleus | 68.46 | 68.7 |
| CDY08817 | Canola | mitochondrion | 30.11 | 68.29 |
| Bra024357.1-P | Field mustard | mitochondrion | 30.11 | 68.29 |
| AT4G39780.1 | Thale cress | nucleus | 43.73 | 44.85 |
| AT2G22200.1 | Thale cress | plastid | 38.35 | 41.0 |
| AT1G22190.1 | Thale cress | nucleus | 37.99 | 40.61 |
| AT1G78080.1 | Thale cress | nucleus | 44.09 | 36.83 |
| AT1G36060.1 | Thale cress | nucleus | 37.28 | 33.12 |
| AT5G25190.1 | Thale cress | mitochondrion | 18.28 | 28.18 |
| AT1G15360.1 | Thale cress | nucleus | 19.71 | 27.64 |
| AT5G11190.1 | Thale cress | mitochondrion, nucleus | 17.92 | 26.45 |
| AT5G25390.2 | Thale cress | nucleus | 16.85 | 24.87 |
| AT1G64380.1 | Thale cress | nucleus | 28.32 | 23.58 |
| AT4G13620.1 | Thale cress | nucleus | 28.32 | 20.36 |
| AT2G20880.1 | Thale cress | nucleus | 24.01 | 19.94 |
| AT4G28140.1 | Thale cress | nucleus | 20.79 | 19.86 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | EntrezGene:836637 | UniProt:A0A178UIA0 | UniProt:A0A1P8B9A2 | ProteinID:AED98006.1 |
| ProteinID:ANM68180.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ArrayExpress:AT5G65130 | EnsemblPlantsGene:AT5G65130 | RefSeq:AT5G65130 |
| TAIR:AT5G65130 | RefSeq:AT5G65130-TAIR-G | EnsemblPlants:AT5G65130.2 | EMBL:AY560858 | ProteinID:BAB11649.1 | EMBL:BT025723 |
| InterPro:DNA-bd_dom_sf | EMBL:DQ447109 | EMBL:DQ653392 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009873 | GO:GO:0009987 | InterPro:IPR001471 |
| InterPro:IPR036955 | RefSeq:NP_001329953.1 | RefSeq:NP_201318.1 | ProteinID:OAO93686.1 | PFAM:PF00847 | PRINTS:PR00367 |
| PFscan:PS51032 | PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0001A70D98 |
| SEG:seg | : | : | : | : | : |
Description
Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT5G65130]
Coordinates
chr5:+:26017185..26018325
Molecular Weight (calculated)
31414.4 Da
IEP (calculated)
7.046
GRAVY (calculated)
-0.543
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMALNMNAY VDEFMEALEP FMKVTSSSST SNSSNPKPLT PNFIPNNDQV LPVSNQTGPI GLNQLTPTQI LQIQTELHLR QNQSRRRAGS HLLTAKPTSM
101: KKIDVATKPV KLYRGVRQRQ WGKWVAEIRL PKNRTRLWLG TFETAQEAAL AYDQAAHKIR GDNARLNFPD IVRQGHYKQI LSPSINAKIE SICNSSDLPL
201: PQIEKQNKTE EVLSGFSKPE KEPEFGEIYG CGYSGSSPES DITLLDFSSD CVKEDESFLM GLHKYPSLEI DWDAIEKLF
101: KKIDVATKPV KLYRGVRQRQ WGKWVAEIRL PKNRTRLWLG TFETAQEAAL AYDQAAHKIR GDNARLNFPD IVRQGHYKQI LSPSINAKIE SICNSSDLPL
201: PQIEKQNKTE EVLSGFSKPE KEPEFGEIYG CGYSGSSPES DITLLDFSSD CVKEDESFLM GLHKYPSLEI DWDAIEKLF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.