Factsheet for Bra024358.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08816	Canola	nucleus	99.65	99.65
CDY14542	Canola	nucleus	86.88	86.88
Bra031880.1-P	Field mustard	nucleus	73.05	74.37
AT5G65130.2	Thale cress	nucleus	69.86	70.61
Bra024357.1-P	Field mustard	mitochondrion	30.14	69.11
Bra010657.1-P	Field mustard	nucleus	45.74	50.0
Bra017879.1-P	Field mustard	nucleus	45.04	48.85
Bra011833.1-P	Field mustard	nucleus	45.04	46.01
Bra031371.1-P	Field mustard	nucleus	41.13	44.62
Bra030255.1-P	Field mustard	plastid	36.52	43.64
Bra008343.1-P	Field mustard	nucleus	45.74	41.48
Bra003659.1-P	Field mustard	nucleus	45.04	39.94
Bra015634.1-P	Field mustard	nucleus	43.62	37.5
Bra040381.1-P	Field mustard	nucleus	36.52	32.09
Bra020490.1-P	Field mustard	mitochondrion	17.73	28.57
Bra036536.1-P	Field mustard	mitochondrion	18.09	28.49
Bra026140.1-P	Field mustard	nucleus	19.86	28.28
Bra016663.1-P	Field mustard	nucleus	19.86	28.0
Bra036543.1-P	Field mustard	nucleus	17.73	27.32
Bra008985.1-P	Field mustard	nucleus	17.38	26.2
Bra009824.1-P	Field mustard	mitochondrion	17.73	26.04
Bra027736.1-P	Field mustard	nucleus	28.01	25.9
Bra027697.1-P	Field mustard	nucleus	28.01	25.57
Bra024222.1-P	Field mustard	nucleus	19.5	24.12
Bra032724.1-P	Field mustard	nucleus	29.79	24.0
Bra010383.1-P	Field mustard	nucleus	22.34	22.83
Bra026770.1-P	Field mustard	nucleus	13.83	22.81
Bra026280.1-P	Field mustard	nucleus	23.05	22.18
Bra009837.1-P	Field mustard	mitochondrion, nucleus	12.41	20.59
Bra031146.1-P	Field mustard	nucleus	22.34	20.26

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra024358	EnsemblPlants:Bra024358.1
EnsemblPlants:Bra024358.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4E6F4	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000253F4F4	SEG:seg

Description

AT5G65130 (E=1e-081) | AP2 domain-containing transcription factor, putative

Coordinates

chrA06:+:15169077..15169925

Molecular Weight (calculated)

31783.7 Da

IEP (calculated)

6.780

GRAVY (calculated)

-0.576

Length

282 amino acids

Sequence
(BLAST)

001: MEIALNRNDY VEEFMKALEP FMKVTSSPSS PSSSKAIPIT HDNQTLPVCN QTGPIGLNQL TPTQILQIQT ELQLRQNQAR RGCSGHDLNV LNAKPTLMKK
101: TNVTKPAKLY RGIRQRHWGK WVAEIRLPKN RTRLWLGTFE TAEEAALAYD QAAHKIRGEN ARLNFPNIAF LGEYNQTLSP SVNAKIEAIC NSSELPPSKL
201: KKPAKTEEGF FGFHYMGHEL EQEREVPDNF GYRSGSSPES DLTLFDFSSE CVKEDESFCM GLQKCPSFEI DWDAIEKLSG SI

Best Arabidopsis Sequence Match ( AT5G65130.2 )
(BLAST)

001: MAMALNMNAY VDEFMEALEP FMKVTSSSST SNSSNPKPLT PNFIPNNDQV LPVSNQTGPI GLNQLTPTQI LQIQTELHLR QNQSRRRAGS HLLTAKPTSM
101: KKIDVATKPV KLYRGVRQRQ WGKWVAEIRL PKNRTRLWLG TFETAQEAAL AYDQAAHKIR GDNARLNFPD IVRQGHYKQI LSPSINAKIE SICNSSDLPL
201: PQIEKQNKTE EVLSGFSKPE KEPEFGEIYG CGYSGSSPES DITLLDFSSD CVKEDESFLM GLHKYPSLEI DWDAIEKLF

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT5G65130]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.