Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000147.1-P | |
| Bra017053.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22190.1 | Bra000147.1-P | AT2G39760.1 | 19843165 |
| AT1G22190.1 | Bra017053.1-P | AT2G39760.1 | 19843165 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21346 | Canola | nucleus | 99.23 | 99.23 |
| CDY38238 | Canola | nucleus | 96.54 | 96.54 |
| AT1G22190.1 | Thale cress | nucleus | 75.77 | 75.48 |
| Bra003659.1-P | Field mustard | nucleus | 63.08 | 51.57 |
| Bra024357.1-P | Field mustard | mitochondrion | 24.23 | 51.22 |
| Bra008343.1-P | Field mustard | nucleus | 60.38 | 50.48 |
| Bra015634.1-P | Field mustard | nucleus | 63.08 | 50.0 |
| KRH53092 | Soybean | nucleus | 56.92 | 49.01 |
| KRH62373 | Soybean | nucleus | 58.08 | 48.09 |
| Solyc04g072900.1.1 | Tomato | nucleus | 48.46 | 47.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.46 | 45.82 |
| Bra017879.1-P | Field mustard | nucleus | 45.77 | 45.77 |
| Bra010657.1-P | Field mustard | nucleus | 44.23 | 44.57 |
| Solyc12g056980.1.1 | Tomato | nucleus | 52.31 | 44.3 |
| Bra011833.1-P | Field mustard | nucleus | 45.77 | 43.12 |
| GSMUA_Achr10P... | Banana | nucleus | 48.46 | 42.86 |
| VIT_18s0001g05250.t01 | Wine grape | nucleus | 60.0 | 42.51 |
| Bra024358.1-P | Field mustard | nucleus | 44.62 | 41.13 |
| PGSC0003DMT400022023 | Potato | nucleus | 52.69 | 40.41 |
| Bra030255.1-P | Field mustard | plastid | 36.54 | 40.25 |
| PGSC0003DMT400024508 | Potato | nucleus | 56.15 | 39.78 |
| Bra040381.1-P | Field mustard | nucleus | 48.46 | 39.25 |
| Bra031880.1-P | Field mustard | nucleus | 39.62 | 37.18 |
| Bra036536.1-P | Field mustard | mitochondrion | 20.77 | 30.17 |
| Bra020490.1-P | Field mustard | mitochondrion | 20.0 | 29.71 |
| Bra009824.1-P | Field mustard | mitochondrion | 20.77 | 28.12 |
| Bra016663.1-P | Field mustard | nucleus | 21.15 | 27.5 |
| Bra026140.1-P | Field mustard | nucleus | 20.77 | 27.27 |
| Bra036543.1-P | Field mustard | nucleus | 18.85 | 26.78 |
| Bra008985.1-P | Field mustard | nucleus | 18.85 | 26.2 |
| Bra027697.1-P | Field mustard | nucleus | 30.38 | 25.57 |
| Bra024222.1-P | Field mustard | nucleus | 21.92 | 25.0 |
| Bra027736.1-P | Field mustard | nucleus | 29.23 | 24.92 |
| Bra010383.1-P | Field mustard | nucleus | 24.62 | 23.19 |
| Bra032724.1-P | Field mustard | nucleus | 30.77 | 22.86 |
| Bra026770.1-P | Field mustard | nucleus | 14.62 | 22.22 |
| Bra031146.1-P | Field mustard | nucleus | 25.38 | 21.22 |
| Bra026280.1-P | Field mustard | nucleus | 23.85 | 21.16 |
| Bra009837.1-P | Field mustard | mitochondrion, nucleus | 12.69 | 19.41 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlantsGene:Bra031371 | EnsemblPlants:Bra031371.1 |
| EnsemblPlants:Bra031371.1-P | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M4ERE7 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0002547528 | SEG:seg |
Description
AT1G22190 (E=1e-071) | AP2 domain-containing transcription factor, putative
Coordinates
chrA05:-:15665555..15666337
Molecular Weight (calculated)
29369.4 Da
IEP (calculated)
5.209
GRAVY (calculated)
-0.684
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTMDYYNS KTFQQTDPFG GELMEALLPF IKSPPTDSPA SAFAFASYPD VCLTQPIPNV SSDLNQTHSY SNLLSPKPVP MKQTASPPKP MKLYRGVRQR
101: HWGKWVAEIR LPRNRTRLWL GTFDTAEEAA LAYDKAAYKL RGDFARLNFP NLRGEFGEYQ PLQSPVDDKL EAICKSLAET QKPTKKSSSR KRSSTAKQPE
201: EVKTEDYSSV VSPPSTESYG SPLSDLTFVD VEEEQEPWNV NFALEKYPSY EIDWDSILST
101: HWGKWVAEIR LPRNRTRLWL GTFDTAEEAA LAYDKAAYKL RGDFARLNFP NLRGEFGEYQ PLQSPVDDKL EAICKSLAET QKPTKKSSSR KRSSTAKQPE
201: EVKTEDYSSV VSPPSTESYG SPLSDLTFVD VEEEQEPWNV NFALEKYPSY EIDWDSILST
001: MTTSMDFYSN KTFQQSDPFG GELMEALLPF IKSPSNDSSA FAFSLPAPIS YGSDLHSFSH HLSPKPVSMK QTGTSAAKPT KLYRGVRQRH WGKWVAEIRL
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N
Arabidopsis Description
RAP2-13Ethylene-responsive transcription factor RAP2-13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.