Factsheet for Bra026770.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67940	Canola	nucleus	92.4	83.16
Bra026140.1-P	Field mustard	nucleus	85.96	74.24
Bra016663.1-P	Field mustard	nucleus	84.21	72.0
AT1G15360.1	Thale cress	nucleus	80.7	69.35
GSMUA_Achr6P05210_001	Banana	nucleus	57.31	53.85
PGSC0003DMT400001703	Potato	nucleus	61.99	51.46
Solyc03g116610.2.1	Tomato	nucleus	60.23	50.99
Bra009837.1-P	Field mustard	mitochondrion, nucleus	47.37	47.65
Zm00001d046501_P001	Maize	nucleus	58.48	46.08
Bra008985.1-P	Field mustard	nucleus	50.29	45.99
TraesCS7A01G376300.1	Wheat	nucleus	59.65	44.93
TraesCS7B01G277800.1	Wheat	nucleus	59.06	44.89
Bra036543.1-P	Field mustard	nucleus	47.95	44.81
TraesCS7D01G372700.1	Wheat	nucleus	59.06	44.49
EER90018	Sorghum	nucleus	59.65	43.4
Os06t0604000-02	Rice	nucleus	60.82	42.8
Zm00001d036889_P001	Maize	nucleus	55.56	41.3
Bra036536.1-P	Field mustard	mitochondrion	32.16	30.73
Bra020490.1-P	Field mustard	mitochondrion	30.99	30.29
Bra009824.1-P	Field mustard	mitochondrion	32.16	28.65
Bra024357.1-P	Field mustard	mitochondrion	15.79	21.95
Bra030255.1-P	Field mustard	plastid	21.05	15.25
Bra031371.1-P	Field mustard	nucleus	22.22	14.62
Bra024358.1-P	Field mustard	nucleus	22.81	13.83
Bra010657.1-P	Field mustard	nucleus	20.47	13.57
Bra031880.1-P	Field mustard	nucleus	21.64	13.36
Bra003659.1-P	Field mustard	nucleus	23.98	12.89
Bra015634.1-P	Field mustard	nucleus	24.56	12.8
Bra024222.1-P	Field mustard	nucleus	16.96	12.72
Bra011833.1-P	Field mustard	nucleus	20.47	12.68
Bra008343.1-P	Field mustard	nucleus	22.81	12.54
Bra017879.1-P	Field mustard	nucleus	18.71	12.31
Bra027697.1-P	Field mustard	nucleus	21.64	11.97
Bra027736.1-P	Field mustard	nucleus	21.05	11.8
Bra040381.1-P	Field mustard	nucleus	20.47	10.9
Bra026280.1-P	Field mustard	nucleus	17.54	10.24
Bra010383.1-P	Field mustard	nucleus	15.79	9.78
Bra032724.1-P	Field mustard	nucleus	18.13	8.86
Bra031146.1-P	Field mustard	nucleus	15.79	8.68

Protein Annotations

MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra026770
EnsemblPlants:Bra026770.1	EnsemblPlants:Bra026770.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4EDB0	PFAM:PF00847	PIRSF:PIRSF038123
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF12	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002542D14
SEG:seg	:	:	:	:	:

Description

AT1G15360 (E=7e-047) SHN1, WIN1 | SHN1 (SHINE 1); DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA09:-:33623633..33624148

Molecular Weight (calculated)

18381.5 Da

IEP (calculated)

5.087

GRAVY (calculated)

-0.514

Length

171 amino acids

Sequence
(BLAST)

001: MINGKRKRRI WLGTFETAEE AARAYDEAAV LMSGRNAKTN FPLKNNSTID TSESKTDISA SASASSSLSS ILSAKLRKCC KSPSPSLTCL RLDTTSSHIG
101: VWQKRAGSKS DSSWVMTVEL GPAGPSHEPT RKASLDDVGL ATEVGDGEEE GAMDEEEKVA LQMIEELLNT N

Best Arabidopsis Sequence Match ( AT1G15360.2 )
(BLAST)

001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPLNNNNTG ETSEGKTDIS ASSTMSSSTS SSSLSSILSA
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN

Arabidopsis Description

WIN1Ethylene-responsive transcription factor WIN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.