CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046501_P001	Maize	nucleus	84.26	91.24
TraesCS7B01G277800.1	Wheat	nucleus	72.77	76.0
TraesCS7D01G372700.1	Wheat	nucleus	73.19	75.77
TraesCS7A01G376300.1	Wheat	nucleus	72.77	75.33
GSMUA_Achr6P05210_001	Banana	nucleus	57.87	74.73
Os06t0604000-02	Rice	nucleus	77.02	74.49
KXG29745	Sorghum	nucleus	65.11	71.83
CDY36551	Canola	nucleus	54.47	69.57
CDX83982	Canola	nucleus	52.77	68.51
CDX96845	Canola	nucleus	52.77	68.51
CDY39637	Canola	nucleus	54.89	67.54
Zm00001d036889_P001	Maize	nucleus	63.83	65.22
Bra026140.1-P	Field mustard	nucleus	54.47	64.65
AT1G15360.1	Thale cress	nucleus	54.47	64.32
CDY67940	Canola	nucleus	51.49	63.68
Bra016663.1-P	Field mustard	nucleus	53.62	63.0
PGSC0003DMT400001703	Potato	nucleus	54.89	62.62
Solyc03g116610.2.1	Tomato	nucleus	52.77	61.39
Bra026770.1-P	Field mustard	nucleus	43.4	59.65
OQU85888	Sorghum	mitochondrion	27.66	41.94
EES12999	Sorghum	mitochondrion	28.09	38.37
EER87969	Sorghum	mitochondrion	27.23	35.36
EES13814	Sorghum	nucleus	22.13	19.19
EER92713	Sorghum	nucleus	21.7	16.09
KXG35507	Sorghum	nucleus	20.43	15.79
EES07235	Sorghum	nucleus	21.7	15.41
EES19973	Sorghum	plastid	18.72	14.57
EER89448	Sorghum	nucleus	20.85	13.35
OQU85375	Sorghum	nucleus	22.13	11.11
KXG26694	Sorghum	nucleus	19.15	9.74

Protein Annotations

MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	EntrezGene:8065075	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
UniProt:C5Z5N4	InterPro:DNA-bd_dom_sf	EnsemblPlants:EER90018	ProteinID:EER90018	ProteinID:EER90018.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009414	GO:GO:0009628	GO:GO:0009987
GO:GO:0010143	GO:GO:0010166	GO:GO:0043565	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF12	SMART:SM00380	EnsemblPlantsGene:SORBI_3010G185300
SUPFAM:SSF54171	UniParc:UPI0001A8997E	RefSeq:XP_002438651.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:52519876..52521350

Molecular Weight (calculated)

24737.3 Da

IEP (calculated)

10.033

GRAVY (calculated)

-0.382

Length

235 amino acids

Sequence
(BLAST)

001: MVQSKKKFRG VRQRHWGSWV SEIRHPLLKR RVWLGTFETA EEAARAYDEA AVLMSGRNAK TNFPVPRTAT GELAPVPAAR DARGGGGSSS AAAAPGGGTS
101: NLSQILSAKL RKCCKTPSPS LTCLRLDPEK SHIGVWQKRA GARADSSWVM TVQLNKDVPP PASSSGEEPV PSDGGAAATT PTSTSTSSTV TTTGSPPPAM
201: MMDDEERIAL QMIEELLGSS HSHGMFQGAA GSIVI

Best Arabidopsis Sequence Match ( AT1G15360.2 )
(BLAST)

001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPLNNNNTG ETSEGKTDIS ASSTMSSSTS SSSLSSILSA
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN

Arabidopsis Description

WIN1Ethylene-responsive transcription factor WIN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.