Factsheet for GSMUA_Achr6P05210_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P28540_001	Banana	mitochondrion, nucleus	77.47	70.85
GSMUA_Achr7P10160_001	Banana	nucleus	76.92	67.96
CDX83982	Canola	nucleus	66.48	66.85
CDX96845	Canola	nucleus	66.48	66.85
CDY36551	Canola	nucleus	67.03	66.3
CDY39637	Canola	nucleus	68.13	64.92
TraesCS7B01G277800.1	Wheat	nucleus	78.02	63.11
TraesCS7D01G372700.1	Wheat	nucleus	78.02	62.56
TraesCS7A01G376300.1	Wheat	nucleus	78.02	62.56
Bra026140.1-P	Field mustard	nucleus	67.03	61.62
CDY67940	Canola	nucleus	64.29	61.58
Bra016663.1-P	Field mustard	nucleus	67.58	61.5
Zm00001d046501_P001	Maize	nucleus	73.08	61.29
PGSC0003DMT400001703	Potato	nucleus	69.23	61.16
Solyc03g116610.2.1	Tomato	nucleus	67.58	60.89
AT1G15360.1	Thale cress	nucleus	66.48	60.8
EER90018	Sorghum	nucleus	74.73	57.87
Bra026770.1-P	Field mustard	nucleus	53.85	57.31
Os06t0604000-02	Rice	nucleus	75.27	56.38
Zm00001d036889_P001	Maize	nucleus	70.88	56.09
GSMUA_Achr7P19320_001	Banana	nucleus	37.91	45.1
GSMUA_Achr9P13760_001	Banana	mitochondrion	37.36	44.74
GSMUA_Achr5P22840_001	Banana	mitochondrion, nucleus	39.01	44.1
GSMUA_Achr10P...	Banana	mitochondrion	37.91	39.2
GSMUA_Achr7P16060_001	Banana	mitochondrion	39.01	30.08
GSMUA_Achr4P02200_001	Banana	mitochondrion	35.71	27.9
GSMUA_Achr6P10440_001	Banana	nucleus	28.57	19.92
GSMUA_Achr8P28500_001	Banana	nucleus	30.22	19.78
GSMUA_Achr10P...	Banana	nucleus	31.87	19.73
GSMUA_Achr10P...	Banana	nucleus	30.22	19.71
GSMUA_AchrUn_...	Banana	nucleus	29.12	19.27
GSMUA_Achr3P04360_001	Banana	nucleus	25.82	18.8
GSMUA_Achr10P...	Banana	nucleus	33.52	17.73
GSMUA_Achr5P09470_001	Banana	nucleus	24.18	17.6
GSMUA_Achr1P27990_001	Banana	nucleus	23.08	16.94
GSMUA_Achr3P01650_001	Banana	nucleus	28.57	15.76
GSMUA_Achr9P12950_001	Banana	nucleus	29.12	15.63
GSMUA_Achr4P26080_001	Banana	nucleus	28.02	12.56
GSMUA_Achr8P14110_001	Banana	nucleus	25.27	11.56

Protein Annotations

MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009414
GO:GO:0009628	GO:GO:0009987	GO:GO:0010143	GO:GO:0010166	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr6G05210_001
EnsemblPlants:GSMUA_Achr6P05210_001	EnsemblPlants:GSMUA_Achr6T05210_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0T4B9	PFAM:PF00847
PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF24	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0002957326	SEG:seg	:	:	:

Description

Ethylene-responsive transcription factor WIN1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G05210_001]

Coordinates

chr6:-:3518109..3518879

Molecular Weight (calculated)

20270.0 Da

IEP (calculated)

8.121

GRAVY (calculated)

-0.524

Length

182 amino acids

Sequence
(BLAST)

001: MVQSKKFRGV RQRHWGSWVA EIRHPLLKRR VWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPVHRASEG EDAAAAHSSS KALAEVLSAK LRKCCKTTPS
101: PSLTCLRLDT EKSHIGVWQK RAGTRADSSW VMTVELGSEA VGEMDDEERL ALQMIEELLS RNRPTSSSSH AGMEGEDHSF FL

Best Arabidopsis Sequence Match ( AT1G15360.2 )
(BLAST)

001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPLNNNNTG ETSEGKTDIS ASSTMSSSTS SSSLSSILSA
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN

Arabidopsis Description

WIN1Ethylene-responsive transcription factor WIN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.