Factsheet for TraesCS7D01G372700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G277800.1	Wheat	nucleus	98.68	99.56
TraesCS7A01G376300.1	Wheat	nucleus	98.68	98.68
GSMUA_Achr6P05210_001	Banana	nucleus	62.56	78.02
Os06t0604000-02	Rice	nucleus	83.26	77.78
Zm00001d046501_P001	Maize	nucleus	71.81	75.12
EER90018	Sorghum	nucleus	75.77	73.19
CDX96845	Canola	nucleus	55.95	70.17
CDX83982	Canola	nucleus	55.51	69.61
CDY36551	Canola	nucleus	56.39	69.57
CDY39637	Canola	nucleus	56.83	67.54
Bra016663.1-P	Field mustard	nucleus	57.27	65.0
Bra026140.1-P	Field mustard	nucleus	56.39	64.65
AT1G15360.1	Thale cress	nucleus	56.39	64.32
CDY67940	Canola	nucleus	53.3	63.68
Solyc03g116610.2.1	Tomato	nucleus	55.51	62.38
PGSC0003DMT400001703	Potato	nucleus	56.39	62.14
Zm00001d036889_P001	Maize	nucleus	62.56	61.74
Bra026770.1-P	Field mustard	nucleus	44.49	59.06
TraesCS2D01G503100.1	Wheat	nucleus	30.4	46.0
TraesCS2D01G503900.1	Wheat	mitochondrion	29.52	42.95
TraesCS7D01G147200.1	Wheat	mitochondrion, nucleus	30.4	42.33
TraesCS7D01G147100.1	Wheat	mitochondrion, nucleus	30.4	42.07
TraesCS6D01G343800.1	Wheat	mitochondrion	29.52	39.41
TraesCS7D01G469200.1	Wheat	nucleus	18.06	24.55
TraesCS4D01G267500.1	Wheat	nucleus	22.03	17.79
TraesCS5D01G200900.2	Wheat	nucleus	21.15	16.9
TraesCS1D01G418900.1	Wheat	plastid	20.26	16.25
TraesCS6D01G281200.1	Wheat	nucleus	22.03	15.02
TraesCS7D01G182700.1	Wheat	nucleus, plastid	21.59	13.39
TraesCS2D01G369900.1	Wheat	nucleus	20.7	10.33
TraesCS6D01G217800.1	Wheat	nucleus	20.7	10.28

Protein Annotations

MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009414
GO:GO:0009628	GO:GO:0009987	GO:GO:0010143	GO:GO:0010166	GO:GO:0043565	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF12
SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS7D01G372700	EnsemblPlants:TraesCS7D01G372700.1	TIGR:cd00018	SEG:seg

Description

No Description!

Coordinates

chr7D:-:482133207..482134424

Molecular Weight (calculated)

24125.5 Da

IEP (calculated)

9.746

GRAVY (calculated)

-0.399

Length

227 amino acids

Sequence
(BLAST)

001: MVQSKKKFRG VRQRHWGSWV SEIRHPLLKR RVWLGTFETA EEAARAYDEA AILMSGRNAK TNFPVPRSAN GEIIVAPAAA RDGRGGVGSS SSGAAGASSL
101: SQILSAKLRK CCKTPSPSLT CLRLDTEKSH IGVWQKRAGA RADSSWVMTV ELNKEPATAA AAPTPSDSTV SATPSSSTST STTGSPPETM EDEERIALQM
201: IEELLSRSSP ASPSHGLLHG EEGSLVI

Best Arabidopsis Sequence Match ( AT5G25390.2 )
(BLAST)

001: MVHSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE TAARAYDQAA VLMNGQSAKT NFPVIKSNGS NSLEINSALR SPKSLSELLN AKLRKNCKDQ
101: TPYLTCLRLD NDSSHIGVWQ KRAGSKTSPN WVKLVELGDK VNARPGGDIE TNKMKVRNED VQEDDQMAMQ MIEELLNWTC PGSGSIAQV

Arabidopsis Description

SHN3SHN3 [Source:UniProtKB/TrEMBL;Acc:A0A178USD7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.