Factsheet for PGSC0003DMT400001703

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g116610.2.1	Tomato	nucleus	93.69	95.54
CDY36551	Canola	nucleus	63.59	71.2
CDX83982	Canola	nucleus	61.65	70.17
CDX96845	Canola	nucleus	61.65	70.17
CDY39637	Canola	nucleus	65.05	70.16
GSMUA_Achr6P05210_001	Banana	nucleus	61.16	69.23
Bra026140.1-P	Field mustard	nucleus	64.56	67.17
CDY67940	Canola	nucleus	61.16	66.32
AT1G15360.1	Thale cress	nucleus	63.59	65.83
Bra016663.1-P	Field mustard	nucleus	63.59	65.5
Bra026770.1-P	Field mustard	nucleus	51.46	61.99
PGSC0003DMT400007494	Potato	nucleus	59.22	60.4
Zm00001d046501_P001	Maize	nucleus	60.68	57.6
TraesCS7B01G277800.1	Wheat	nucleus	62.14	56.89
TraesCS7D01G372700.1	Wheat	nucleus	62.14	56.39
TraesCS7A01G376300.1	Wheat	nucleus	62.14	56.39
EER90018	Sorghum	nucleus	62.62	54.89
Zm00001d036889_P001	Maize	nucleus	58.74	52.61
Os06t0604000-02	Rice	nucleus	61.16	51.85
PGSC0003DMT400077702	Potato	nucleus	50.0	50.99
PGSC0003DMT400036634	Potato	mitochondrion, nucleus	33.5	43.4
PGSC0003DMT400036817	Potato	mitochondrion, nucleus	33.5	43.4
PGSC0003DMT400039593	Potato	nucleus	14.56	41.67
PGSC0003DMT400073334	Potato	mitochondrion	33.98	38.46
PGSC0003DMT400067218	Potato	mitochondrion	33.01	34.69
PGSC0003DMT400080372	Potato	nucleus	25.24	20.16
PGSC0003DMT400031685	Potato	nucleus	26.21	18.37
PGSC0003DMT400014953	Potato	nucleus	25.73	16.99
PGSC0003DMT400022023	Potato	nucleus	24.76	15.04
PGSC0003DMT400053152	Potato	nucleus	25.24	14.05
PGSC0003DMT400024508	Potato	nucleus	24.76	13.9
PGSC0003DMT400091991	Potato	nucleus	20.39	12.35
PGSC0003DMT400047265	Potato	nucleus	22.82	12.08
PGSC0003DMT400039576	Potato	nucleus	19.9	11.61

Protein Annotations

EntrezGene:102597614	MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009414	GO:GO:0009628	GO:GO:0009987	GO:GO:0010143	GO:GO:0010166	GO:GO:0043565
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0ZIY5	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400000636	PGSC:PGSC0003DMG400000636
EnsemblPlants:PGSC0003DMT400001703	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF24
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002964FE8	RefSeq:XP_006364209.1	SEG:seg	:

Description

AP2 transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400000636]

Coordinates

chr3:-:56422932..56424108

Molecular Weight (calculated)

22999.1 Da

IEP (calculated)

8.491

GRAVY (calculated)

-0.643

Length

206 amino acids

Sequence
(BLAST)

001: MVQAKKFRGV RQRHWGSWVA EIRHPLLKRR VWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPVQATDEN KKDNSKSNNS ALSAGSSSSS LSAILSAKLR
101: KSCKSPSPSL TCLRLDTESS NIGVWQKRAG ARPDSSWVMT VEFGKKKIIN DNEQIMIIPD ENVTSSSTFS SQDQNSIEIE EGKECGVMNE EERMALQMIE
201: ELLNRN

Best Arabidopsis Sequence Match ( AT1G15360.2 )
(BLAST)

001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPLNNNNTG ETSEGKTDIS ASSTMSSSTS SSSLSSILSA
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN

Arabidopsis Description

WIN1Ethylene-responsive transcription factor WIN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.