Factsheet for PGSC0003DMT400091991

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039593	Potato	nucleus	18.53	87.5
PGSC0003DMT400039576	Potato	nucleus	90.59	87.25
Solyc12g013660.1.1	Tomato	nucleus	87.06	83.85
VIT_00s0662g00030.t01	Wine grape	nucleus	18.53	27.51
PGSC0003DMT400036634	Potato	mitochondrion, nucleus	12.06	25.79
PGSC0003DMT400036817	Potato	mitochondrion, nucleus	12.06	25.79
PGSC0003DMT400073334	Potato	mitochondrion	12.94	24.18
PGSC0003DMT400047265	Potato	nucleus	27.65	24.16
PGSC0003DMT400067218	Potato	mitochondrion	12.35	21.43
PGSC0003DMT400080372	Potato	nucleus	15.59	20.54
PGSC0003DMT400001703	Potato	nucleus	12.35	20.39
PGSC0003DMT400077702	Potato	nucleus	11.47	19.31
PGSC0003DMT400007494	Potato	nucleus	11.47	19.31
PGSC0003DMT400022023	Potato	nucleus	19.12	19.17
PGSC0003DMT400031685	Potato	nucleus	16.47	19.05
PGSC0003DMT400014953	Potato	nucleus	16.76	18.27
PGSC0003DMT400024508	Potato	nucleus	19.71	18.26
PGSC0003DMT400053152	Potato	nucleus	18.53	17.03

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M1DNV0
PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400041562	PGSC:PGSC0003DMG400041562	EnsemblPlants:PGSC0003DMT400091991	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00029544B4	SEG:seg

Description

AP2 domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400041562]

Coordinates

chr12:-:748927..749949

Molecular Weight (calculated)

38811.1 Da

IEP (calculated)

6.854

GRAVY (calculated)

-0.750

Length

340 amino acids

Sequence
(BLAST)

001: MSMYRPLKKL KISPSSQHNN LRSSGDGVEP VAQRIRAHGY ESQFPFPFAL DDPPSSNCHI NWQSLTQNQT MISFAPQSCF NQCRITNSGT RTTTMMNVYG
101: TVSSPAPKRY RGVRQRHWGK WVAEIRLPRE RTRLWLGTFE SAEEAAFAYD VEAFRLRGTD ARLNFPHLFL GDLAPTDNNI DETNSASSST TSFAKNPSQI
201: QNNKRCIRQC RNKNRVPSAM EQSTSVLDRE ISMQAKAAYN KPLWYDPSQD FVHNESLVHE TFQIKMLDGS DFYESTPKYT CSIQQENSDI WKNVLQSSPF
301: GNYSICTDDN LQQQQQQCDF TITDPGFGDD VFDFSSNPLE

Best Arabidopsis Sequence Match ( AT2G20880.1 )
(BLAST)

001: MATAKNKGKS IRVLGTSEAE KKDEMELEEE FQFSSGKYKD SGPGSDMWLG DASSTSPRSL RKTRTFDRHN PYLVSSYATP QPPTTTTCSV SFPFYLPPAI
101: QNQQRFLHPN DPSGQRQQQM ISFDPQQQVQ PYVAQQQQQQ QHLLQYWRDI LKLSPSGRMM MMNMLRQESD LPLTRPPVQP FSATKLYRGV RQRHWGKWVA
201: EIRKPRNRTR LWLGTFDTAE EAAMAYDREA FKLRGETARL NFPELFLNKQ EPTPVHQKQC ETGTTSEDSS RRGEDDSSTA LAVGGVSEET GWAEAWFNAI
301: PEEWGPGSPL WDDYHFPISN HKDDLDATQN SSSDTI

Arabidopsis Description

ERF053Ethylene-responsive transcription factor ERF053 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.