Factsheet for VIT_00s0662g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0043g00510.t01	Wine grape	mitochondrion, nucleus	11.35	59.09
VIT_00s0662g00040.t01	Wine grape	nucleus	96.07	58.82
PGSC0003DMT400039593	Potato	nucleus	17.9	56.94
VIT_18s0001g05250.t01	Wine grape	nucleus	67.25	41.96
VIT_07s0031g00420.t01	Wine grape	nucleus	11.79	28.12
VIT_02s0025g01360.t01	Wine grape	nucleus	31.44	27.27
VIT_09s0002g09120.t01	Wine grape	nucleus	17.47	22.86
VIT_09s0002g06750.t01	Wine grape	mitochondrion	18.34	22.7
VIT_09s0002g09140.t01	Wine grape	nucleus	17.47	22.6
VIT_04s0008g06000.t01	Wine grape	mitochondrion	17.9	21.93
VIT_11s0016g05340.t01	Wine grape	nucleus	17.47	19.61
VIT_04s0008g05440.t01	Wine grape	nucleus	16.59	19.59
VIT_19s0014g03180.t01	Wine grape	nucleus	34.06	19.35
PGSC0003DMT400091991	Potato	nucleus	27.51	18.53
VIT_12s0059g00280.t01	Wine grape	nucleus	35.81	17.63
VIT_05s0029g00140.t01	Wine grape	nucleus	31.0	17.57
Solyc12g013660.1.1	Tomato	nucleus	26.64	17.28
PGSC0003DMT400039576	Potato	nucleus	26.64	17.28

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CCB48427	ProteinID:CCB48427.1
InterPro:DNA-bd_dom_sf	UniProt:F6H884	EMBL:FN595284	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171	TIGR:TC66843	UniParc:UPI000210A6BF
ArrayExpress:VIT_00s0662g00030	EnsemblPlantsGene:VIT_00s0662g00030	EnsemblPlants:VIT_00s0662g00030.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:33763132..33765774

Molecular Weight (calculated)

25624.3 Da

IEP (calculated)

10.333

GRAVY (calculated)

-0.598

Length

229 amino acids

Sequence
(BLAST)

001: MKALEPFMKG ASSTSSLTSP YPYPSTSSLS PPSTSSSSLP FFSYPPDSTQ PNMYPDFCST STTHVFSQGF SGYDQMGLEQ TGSIGLNHIT PAQILQIQAQ
101: IQFQQQQQQR MAAVATASSI QNQRLSQWQQ QQQQQQHTLN FLGPKAIPMK QVGTPPKPAK LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT FDTAEEAALA
201: YDKAAFKLRG EFARLNFPNL RHQGSLVAE

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.