Factsheet for VIT_11s0016g05340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0043g00510.t01	Wine grape	mitochondrion, nucleus	15.69	72.73
VIT_09s0002g06750.t01	Wine grape	mitochondrion	55.88	61.62
VIT_04s0008g05440.t01	Wine grape	nucleus	58.33	61.34
Os02t0202000-01	Rice	nucleus	60.29	60.0
KRH62994	Soybean	nucleus	63.24	59.17
TraesCS6A01G181400.2	Wheat	nucleus	59.8	58.94
TraesCS6B01G210300.1	Wheat	nucleus	59.8	58.94
HORVU6Hr1G038120.3	Barley	nucleus	59.31	58.74
KRH54960	Soybean	nucleus	62.75	58.45
Zm00001d015759_P001	Maize	nucleus	60.29	57.75
KXG29745	Sorghum	nucleus	59.8	57.28
GSMUA_Achr7P10160_001	Banana	nucleus	57.35	56.8
GSMUA_Achr9P28540_001	Banana	mitochondrion, nucleus	55.39	56.78
KRH03696	Soybean	nucleus	65.2	55.65
KRH20262	Soybean	nucleus	64.71	55.46
VIT_07s0031g00420.t01	Wine grape	nucleus	19.61	41.67
VIT_04s0008g06000.t01	Wine grape	mitochondrion	36.27	39.57
VIT_09s0002g09120.t01	Wine grape	nucleus	33.33	38.86
VIT_09s0002g09140.t01	Wine grape	nucleus	33.33	38.42
VIT_02s0025g01360.t01	Wine grape	nucleus	23.04	17.8
VIT_00s0662g00030.t01	Wine grape	nucleus	19.61	17.47
VIT_18s0001g05250.t01	Wine grape	nucleus	25.49	14.17
VIT_00s0662g00040.t01	Wine grape	nucleus	25.0	13.64
VIT_05s0029g00140.t01	Wine grape	nucleus	25.0	12.62
VIT_19s0014g03180.t01	Wine grape	nucleus	21.08	10.67
VIT_12s0059g00280.t01	Wine grape	nucleus	24.02	10.54

Protein Annotations

EntrezGene:100266250	wikigene:100266250	MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CCB51587	ProteinID:CCB51587.1	InterPro:DNA-bd_dom_sf	UniProt:F6HH91
EMBL:FN595756	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EntrezGene:LOC100266250	wikigene:LOC100266250	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF24	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0001984293
ArrayExpress:VIT_11s0016g05340	EnsemblPlantsGene:VIT_11s0016g05340	EnsemblPlants:VIT_11s0016g05340.t01	unigene:Vvi.20322	RefSeq:XP_002285215	RefSeq:XP_002285215.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:4677731..4680660

Molecular Weight (calculated)

22543.7 Da

IEP (calculated)

7.046

GRAVY (calculated)

-0.653

Length

204 amino acids

Sequence
(BLAST)

001: MVQSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFETAE EAARAYDQAA VLMSGRNAKT NFPVAQTPTP ENTSTYQDPH SSTKALSEIL QAKLRKSSKV
101: PSPSLTCLKL DPENSHIGVW QKSAGQCSNS NWVMIVEPGE KKKGHTSEGA SPLSKSSSPL PGPEFGSGME IEEDRIALQM VEELLDENCP SPILEIQDGE
201: GTQM

Best Arabidopsis Sequence Match ( AT1G15360.2 )
(BLAST)

001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPLNNNNTG ETSEGKTDIS ASSTMSSSTS SSSLSSILSA
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN

Arabidopsis Description

WIN1Ethylene-responsive transcription factor WIN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.