Factsheet for VIT_05s0029g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080372	Potato	nucleus	35.15	55.04
VIT_04s0043g00510.t01	Wine grape	mitochondrion, nucleus	5.94	54.55
CDY53558	Canola	nucleus	35.89	41.55
Solyc09g091950.1.1	Tomato	extracellular, nucleus	42.57	41.05
Bra032724.1-P	Field mustard	nucleus	35.4	40.86
KRH34596	Soybean	nucleus	38.12	39.79
KRG92191	Soybean	nucleus	39.11	38.73
GSMUA_Achr8P28500_001	Banana	nucleus	26.24	38.13
AT4G13620.1	Thale cress	nucleus	36.39	37.89
VIT_00s0662g00030.t01	Wine grape	nucleus	17.57	31.0
VIT_02s0025g01360.t01	Wine grape	nucleus	18.81	28.79
VIT_07s0031g00420.t01	Wine grape	nucleus	6.68	28.12
VIT_09s0002g06750.t01	Wine grape	mitochondrion	12.38	27.03
VIT_09s0002g09140.t01	Wine grape	nucleus	11.63	26.55
VIT_09s0002g09120.t01	Wine grape	nucleus	11.39	26.29
VIT_04s0008g06000.t01	Wine grape	mitochondrion	12.13	26.2
VIT_11s0016g05340.t01	Wine grape	nucleus	12.62	25.0
VIT_18s0001g05250.t01	Wine grape	nucleus	22.28	24.52
VIT_04s0008g05440.t01	Wine grape	nucleus	11.63	24.23
VIT_00s0662g00040.t01	Wine grape	nucleus	21.78	23.53
VIT_19s0014g03180.t01	Wine grape	nucleus	19.8	19.85
VIT_12s0059g00280.t01	Wine grape	nucleus	20.3	17.63

Protein Annotations

EntrezGene:100255447	MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CCB44324
ProteinID:CCB44324.1	InterPro:DNA-bd_dom_sf	UniProt:F6GWG1	EMBL:FN594958	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF23	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000210867E
ArrayExpress:VIT_05s0029g00140	EnsemblPlantsGene:VIT_05s0029g00140	EnsemblPlants:VIT_05s0029g00140.t01	RefSeq:XP_010650343.1	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:14296111..14297784

Molecular Weight (calculated)

44746.5 Da

IEP (calculated)

7.381

GRAVY (calculated)

-0.541

Length

404 amino acids

Sequence
(BLAST)

001: MEDQFPKMQT FLRKELPSYF QGPVGSRFFG DATIWDGLAE SASCNHVTGS NVKLSSSSPD SLFSSSESTS SVDEASASNL VKNMPEFTRE DPLQTQHGVP
101: FFSGSNSVNL SGASSTSDVN QRFIPEPSTV VIDPSTQIAN SLGRNEKCEP MSSCPLFPTP QLSQSQHLPG FEWLKINQSL ANHPSKGLSD YWLSTTKTQP
201: MKYTGRRMLN HQQKTSLSSS ASSPGKLFRG VRQRHWGKWV AEIRLPRNRT RVWLGTFDTA QEAAFAYDTA AYILRGDYAH LNFPELKHQL KANSTNGTTA
301: ALLEAKLQAI SKGISAHKEP IAPPPPPSPK QHYLPYDNSK VAKAVSQNPT SKEWQLELEY KIAHEIVENK KIQEVVLDMD GVQLSRMPSL DMDAIWDAIL
401: VSDS

Best Arabidopsis Sequence Match ( AT4G13620.1 )
(BLAST)

001: MITPIHTQHS LILVYINIYS PPILSKLRTG FILWTNTQKT NKKRNMEDQF PKIETSFMHD KLLSSGIYGF LSSSTPPQLL GVPIFLEGMK SPLLPASSTP
101: SYFVSPHDHE LTSSIHPSPV ASVPWNFLES FPQSQHPDHH PSKPPNLTLF LKEPKLLELS QSESNMSPYH KYIPNSFYQS DQNRNEWVEI NKTLTNYPSK
201: GFGNYWLSTT KTQPMKSKTR KVVQTTTPTK LYRGVRQRHW GKWVAEIRLP RNRTRVWLGT FETAEQAAMA YDTAAYILRG EFAHLNFPDL KHQLKSGSLR
301: CMIASLLESK IQQISSSQVS NSPSPPPPKV GTPEQKNHHM KMESGEDVMM KKQKSHKEVM EGDGVQLSRM PSLDMDLIWD ALSFPHSS

Arabidopsis Description

ERF062Ethylene-responsive transcription factor ERF062 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.