Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_13s0019g02260.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22190.1 | VIT_13s0019g02260.t01 | AT2G39760.1 | 19843165 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0662g00030.t01 | Wine grape | nucleus | 41.96 | 67.25 |
| KRH53092 | Soybean | nucleus | 50.95 | 61.92 |
| VIT_04s0043g00510.t01 | Wine grape | mitochondrion, nucleus | 7.36 | 61.36 |
| KRH62373 | Soybean | nucleus | 51.77 | 60.51 |
| CDY38238 | Canola | nucleus | 42.78 | 60.38 |
| Bra031371.1-P | Field mustard | nucleus | 42.51 | 60.0 |
| CDY21346 | Canola | nucleus | 42.51 | 60.0 |
| AT1G22190.1 | Thale cress | nucleus | 42.51 | 59.77 |
| VIT_00s0662g00040.t01 | Wine grape | nucleus | 60.49 | 59.36 |
| Solyc04g072900.1.1 | Tomato | nucleus | 42.51 | 59.09 |
| Solyc12g056980.1.1 | Tomato | nucleus | 46.05 | 55.05 |
| PGSC0003DMT400022023 | Potato | nucleus | 48.23 | 52.21 |
| PGSC0003DMT400024508 | Potato | nucleus | 50.95 | 50.95 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.6 | 50.18 |
| GSMUA_Achr10P... | Banana | nucleus | 38.15 | 47.62 |
| VIT_07s0031g00420.t01 | Wine grape | nucleus | 8.45 | 32.29 |
| VIT_04s0008g06000.t01 | Wine grape | mitochondrion | 16.35 | 32.09 |
| VIT_02s0025g01360.t01 | Wine grape | nucleus | 22.62 | 31.44 |
| VIT_09s0002g09140.t01 | Wine grape | nucleus | 14.71 | 30.51 |
| VIT_09s0002g09120.t01 | Wine grape | nucleus | 14.44 | 30.29 |
| VIT_09s0002g06750.t01 | Wine grape | mitochondrion | 14.99 | 29.73 |
| VIT_04s0008g05440.t01 | Wine grape | nucleus | 14.17 | 26.8 |
| VIT_11s0016g05340.t01 | Wine grape | nucleus | 14.17 | 25.49 |
| VIT_19s0014g03180.t01 | Wine grape | nucleus | 27.79 | 25.31 |
| VIT_05s0029g00140.t01 | Wine grape | nucleus | 24.52 | 22.28 |
| VIT_12s0059g00280.t01 | Wine grape | nucleus | 26.98 | 21.29 |
Protein Annotations
| EntrezGene:100245515 | wikigene:100245515 | MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| ProteinID:CCB45557 | ProteinID:CCB45557.1 | InterPro:DNA-bd_dom_sf | UniProt:F6H0W0 | EMBL:FN595227 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | EntrezGene:LOC100245515 |
| wikigene:LOC100245515 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 |
| SMART:SM00380 | SUPFAM:SSF54171 | TIGR:TC52194 | UniParc:UPI000198543E | ArrayExpress:VIT_18s0001g05250 | EnsemblPlantsGene:VIT_18s0001g05250 |
| EnsemblPlants:VIT_18s0001g05250.t01 | unigene:Vvi.26425 | unigene:Vvi.6671 | RefSeq:XP_002285802 | RefSeq:XP_002285802.1 | SEG:seg |
Description
No Description!
Coordinates
chr18:+:4220268..4222313
Molecular Weight (calculated)
40199.5 Da
IEP (calculated)
6.952
GRAVY (calculated)
-0.650
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTVDFYSS RPLQSASCGG ELMEALEPFM KNASSTSPSS TLSPSSSPST SSFYPSSDFY SPISTQYPDG CSTSTTHVIS QGFSSHDLQG FEHSGPIGLN
101: HLTPSQIHQI QAQIQLQQHH NHMPAVAAAA SFNTQNLPQW QQRQQAPNFL SPKPIPMKQV GVPPKPTKLY RGVRQRHWGK WVAEIRLPKN RTRLWLGTFD
201: TAEEAALAYD KAAYKLRGDF ARLNFPNLRH QGSHIGGEFG DYKPLHSSVD AKLQAICQSL AETQKQGKPT QGKKSRSRAV APSASQPVTV SESSTLSEQG
301: SEDCKVEPTS SSMFTESDGS GGSSPLSDLT FPDDCEEAPF YGAWENFNLQ KYPSNEIDWA AISSQWP
101: HLTPSQIHQI QAQIQLQQHH NHMPAVAAAA SFNTQNLPQW QQRQQAPNFL SPKPIPMKQV GVPPKPTKLY RGVRQRHWGK WVAEIRLPKN RTRLWLGTFD
201: TAEEAALAYD KAAYKLRGDF ARLNFPNLRH QGSHIGGEFG DYKPLHSSVD AKLQAICQSL AETQKQGKPT QGKKSRSRAV APSASQPVTV SESSTLSEQG
301: SEDCKVEPTS SSMFTESDGS GGSSPLSDLT FPDDCEEAPF YGAWENFNLQ KYPSNEIDWA AISSQWP
001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA
Arabidopsis Description
RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.