Factsheet for Solyc12g056980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009060.2.1
Solyc01g080250.2.1
Solyc04g072900.1.1
Solyc05g052960.2.1
Solyc11g072070.1.1
Solyc12g056980.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22190.1	Solyc05g052960.2.1	AT2G39760.1	19843165
AT1G78080.1	Solyc04g072900.1.1	AT1G78080.1	19843165
AT1G78080.1	Solyc12g056980.1.1	AT1G78080.1	19843165
AT1G78080.1	Solyc05g052960.2.1	AT2G39760.1	19843165
AT1G78080.1	Solyc01g080250.2.1	AT3G06190.1	19843165
AT1G78080.1	Solyc01g009060.2.1	AT3G43700.1	19843165
AT1G78080.1	Solyc11g072070.1.1	AT3G43700.1	19843165
AT1G78080.1	Solyc01g009060.2.1	AT5G21010.1	19843165
AT1G78080.1	Solyc11g072070.1.1	AT5G21010.1	19843165

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022023	Potato	nucleus	95.11	86.14
Solyc04g072900.1.1	Tomato	nucleus	52.77	61.36
Solyc06g053240.2.1	Tomato	nucleus	5.54	54.84
CDY14636	Canola	nucleus, plastid	44.63	54.8
AT1G22190.1	Thale cress	nucleus	45.93	54.02
CDY38238	Canola	nucleus	44.63	52.69
CDY21346	Canola	nucleus	44.3	52.31
Bra031371.1-P	Field mustard	nucleus	44.3	52.31
CDX87480	Canola	nucleus	45.93	51.65
KRH53092	Soybean	nucleus	49.84	50.66
KRH62373	Soybean	nucleus	49.19	48.09
KRH16699	Soybean	nucleus	48.86	48.08
Bra008343.1-P	Field mustard	nucleus	47.88	47.27
CDY26847	Canola	nucleus	47.88	47.27
Bra003659.1-P	Field mustard	nucleus	48.53	46.86
AT1G78080.1	Thale cress	nucleus	50.16	46.11
CDX68032	Canola	nucleus	48.21	46.11
VIT_18s0001g05250.t01	Wine grape	nucleus	55.05	46.05
CDX88414	Canola	nucleus	47.88	45.79
Solyc04g054910.2.1	Tomato	nucleus	41.37	45.68
KRH18890	Soybean	nucleus	46.25	45.66
CDX79244	Canola	nucleus	49.19	45.21
Bra015634.1-P	Field mustard	nucleus	47.56	44.51
GSMUA_AchrUn_...	Banana	nucleus	39.74	44.36
GSMUA_Achr10P...	Banana	nucleus	40.39	42.18
Solyc03g117130.2.1	Tomato	mitochondrion, nucleus	17.26	32.72
Solyc06g068360.2.1	Tomato	mitochondrion, nucleus	17.59	29.83
Solyc08g082210.2.1	Tomato	nucleus	25.08	29.17
Solyc06g065820.2.1	Tomato	mitochondrion	17.59	26.47
Solyc03g116610.2.1	Tomato	nucleus	16.29	24.75
Solyc12g009490.1.1	Tomato	nucleus	17.59	24.32
Solyc07g054220.1.1	Tomato	nucleus	25.41	20.0
Solyc09g091950.1.1	Tomato	extracellular, nucleus	26.06	19.09
Solyc12g013660.1.1	Tomato	nucleus	20.52	17.85

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4DG29
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc12g056980.1	EnsemblPlants:Solyc12g056980.1.1	UniParc:UPI000276A1E5	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:63061337..63062350

Molecular Weight (calculated)

33665.4 Da

IEP (calculated)

8.899

GRAVY (calculated)

-0.539

Length

307 amino acids

Sequence
(BLAST)

001: MATSTMDFWT TTLLDLNSSN SGGELMEALA PFIKSASSPS PSPSVSPSFD LQSSSLSTSF LYESFSSTSQ PNMSSIGLNQ AQIYLSQQVM PAVTFQNNNQ
101: YASYLGPKPV SMKQTGSPPK PPKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA ALAYDKAAYK LRGEFARLNF PHLRHNGSLI GSEFGEYKPL
201: HSSVNAKLQA ICQDLAQGKS IDTKKKRKVS SKAMMVEVEE KEYKKSKTTA EAGSESDGSG SGSGSGSGSG SSPISEYTFD SIWDMCSENY VLHKDPSQEI
301: FNWASLL

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.