Factsheet for Bra003659.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000147.1-P
Bra001186.1-P
Bra003659.1-P
Bra006591.1-P
Bra008343.1-P
Bra015634.1-P
Bra017053.1-P
Bra020142.1-P
Bra020764.1-P
Bra036437.1-P
Bra040233.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78080.1	Bra003659.1-P	AT1G78080.1	19843165
AT1G78080.1	Bra008343.1-P	AT1G78080.1	19843165
AT1G78080.1	Bra015634.1-P	AT1G78080.1	19843165
AT1G78080.1	Bra000147.1-P	AT2G39760.1	19843165
AT1G78080.1	Bra017053.1-P	AT2G39760.1	19843165
AT1G78080.1	Bra036437.1-P	AT3G03740.1	19843165
AT1G78080.1	Bra001186.1-P	AT3G06190.1	19843165
AT1G78080.1	Bra020764.1-P	AT3G06190.1	19843165
AT1G78080.1	Bra040233.1-P	AT3G06190.1	19843165
AT1G78080.1	Bra006591.1-P	AT5G21010.1	19843165
AT1G78080.1	Bra020142.1-P	AT5G21010.1	19843165

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68032	Canola	nucleus	96.86	95.95
Bra008343.1-P	Field mustard	nucleus	81.45	83.28
AT1G78080.1	Thale cress	nucleus	81.45	77.54
Bra015634.1-P	Field mustard	nucleus	79.87	77.44
Bra031371.1-P	Field mustard	nucleus	51.57	63.08
Solyc04g072900.1.1	Tomato	nucleus	45.28	54.55
KRH16699	Soybean	nucleus	52.2	53.21
Bra024357.1-P	Field mustard	mitochondrion	19.81	51.22
KRH18890	Soybean	nucleus	48.74	49.84
Bra017879.1-P	Field mustard	nucleus	40.57	49.62
Bra010657.1-P	Field mustard	nucleus	39.94	49.22
Solyc12g056980.1.1	Tomato	nucleus	46.86	48.53
Bra011833.1-P	Field mustard	nucleus	41.51	47.83
PGSC0003DMT400024508	Potato	nucleus	52.83	45.78
GSMUA_AchrUn_...	Banana	nucleus	38.99	45.09
Bra024358.1-P	Field mustard	nucleus	39.94	45.04
Bra030255.1-P	Field mustard	plastid	33.33	44.92
PGSC0003DMT400022023	Potato	nucleus	47.48	44.54
GSMUA_Achr10P...	Banana	nucleus	40.88	44.22
Bra040381.1-P	Field mustard	nucleus	42.77	42.37
Bra031880.1-P	Field mustard	nucleus	36.79	42.24
Bra020490.1-P	Field mustard	mitochondrion	16.98	30.86
Bra036536.1-P	Field mustard	mitochondrion	17.3	30.73
Bra026140.1-P	Field mustard	nucleus	17.92	28.79
Bra009824.1-P	Field mustard	mitochondrion	17.3	28.65
Bra016663.1-P	Field mustard	nucleus	17.92	28.5
Bra008985.1-P	Field mustard	nucleus	16.67	28.34
Bra036543.1-P	Field mustard	nucleus	16.04	27.87
Bra027697.1-P	Field mustard	nucleus	27.04	27.83
Bra024222.1-P	Field mustard	nucleus	19.81	27.63
Bra027736.1-P	Field mustard	nucleus	25.16	26.23
Bra010383.1-P	Field mustard	nucleus	21.7	25.0
Bra026280.1-P	Field mustard	nucleus	22.33	24.23
Bra032724.1-P	Field mustard	nucleus	26.42	24.0
Bra026770.1-P	Field mustard	nucleus	12.89	23.98
Bra031146.1-P	Field mustard	nucleus	22.64	23.15
Bra009837.1-P	Field mustard	mitochondrion, nucleus	11.95	22.35

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra003659	EnsemblPlants:Bra003659.1
EnsemblPlants:Bra003659.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CHH6	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002541465	SEG:seg

Description

AT1G78080 (E=4e-103) RAP2.4 | RAP2.4 (related to AP2 4); DNA binding / transcription factor

Coordinates

chrA07:-:14301614..14302570

Molecular Weight (calculated)

34827.8 Da

IEP (calculated)

6.176

GRAVY (calculated)

-0.508

Length

318 amino acids

Sequence
(BLAST)

001: MEAAMNLNSS RTFQQPDSFG GGGGELMEAL LPFIKSVSDS PSASASAFIN PAASAFPLPT FPGYYPELTQ LFPYGSDLQQ TGSLIGLNNL SPTQIHQIQS
101: QIHHNHPLPP TRSNLSPKPL LMKQPGVAGS CFADGAPPKP AKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTFDTAEEAA LAYDTAAFKL RGDFARLNFP
201: NLRHDGSRIG GEFGEYKPLH STVDAKLEAI CKSMAETEKQ EKTTKASKKR ASTAAVKAEE NSNSIGESPP VTEFVESAGS SPLSELTFAD AEEQPQWNET
301: FALEKYPSYE IDWDSILP

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.