Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH16699 | Soybean | nucleus | 85.53 | 85.26 |
| KRH53092 | Soybean | nucleus | 61.09 | 62.91 |
| KRH62373 | Soybean | nucleus | 63.02 | 62.42 |
| CDY14636 | Canola | nucleus, plastid | 43.73 | 54.4 |
| CDX87480 | Canola | nucleus | 45.34 | 51.65 |
| Bra008343.1-P | Field mustard | nucleus | 51.13 | 51.13 |
| CDY26847 | Canola | nucleus | 51.13 | 51.13 |
| Solyc04g072900.1.1 | Tomato | nucleus | 42.77 | 50.38 |
| AT1G78080.1 | Thale cress | nucleus | 52.73 | 49.1 |
| Bra003659.1-P | Field mustard | nucleus | 49.84 | 48.74 |
| CDX68032 | Canola | nucleus | 49.84 | 48.29 |
| CDX88414 | Canola | nucleus | 49.84 | 48.29 |
| CDX79244 | Canola | nucleus | 50.8 | 47.31 |
| Bra015634.1-P | Field mustard | nucleus | 49.84 | 47.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.48 | 46.91 |
| Solyc12g056980.1.1 | Tomato | nucleus | 45.66 | 46.25 |
| KRG97594 | Soybean | nucleus | 44.37 | 44.66 |
| KRH31278 | Soybean | nucleus | 45.34 | 44.34 |
| GSMUA_Achr10P... | Banana | nucleus | 41.48 | 43.88 |
| PGSC0003DMT400024508 | Potato | nucleus | 51.13 | 43.32 |
| KRH43213 | Soybean | nucleus | 43.09 | 42.95 |
| PGSC0003DMT400022023 | Potato | nucleus | 45.66 | 41.89 |
| KRH59367 | Soybean | nucleus | 41.8 | 41.67 |
| KRH09667 | Soybean | mitochondrion, nucleus | 18.65 | 32.58 |
| KRH09737 | Soybean | nucleus | 17.04 | 30.11 |
| KRH61698 | Soybean | mitochondrion, nucleus | 18.65 | 30.05 |
| KRH52366 | Soybean | mitochondrion, nucleus | 18.65 | 29.9 |
| KRH47384 | Soybean | mitochondrion, nucleus | 18.65 | 29.9 |
| KRH44522 | Soybean | mitochondrion | 18.65 | 29.74 |
| KRH05258 | Soybean | nucleus | 18.65 | 28.71 |
| KRH15790 | Soybean | nucleus | 17.68 | 27.64 |
| KRH47461 | Soybean | nucleus | 16.72 | 27.51 |
| KRH77640 | Soybean | nucleus | 27.33 | 27.07 |
| KRH52445 | Soybean | nucleus | 16.08 | 27.03 |
| KRH44444 | Soybean | nucleus | 17.36 | 27.0 |
| KRH12836 | Soybean | nucleus | 10.93 | 26.77 |
| KRH27850 | Soybean | nucleus | 27.65 | 26.46 |
| KRH05157 | Soybean | nucleus | 16.72 | 26.13 |
| KRH61776 | Soybean | nucleus | 16.08 | 26.04 |
| KRH23632 | Soybean | nucleus | 18.65 | 25.66 |
| KRH62994 | Soybean | nucleus | 16.72 | 23.85 |
| KRH54960 | Soybean | nucleus | 16.4 | 23.29 |
| KRH34596 | Soybean | nucleus | 28.94 | 23.26 |
| KRH20262 | Soybean | nucleus | 16.72 | 21.85 |
| KRG92191 | Soybean | nucleus | 28.62 | 21.81 |
| KRH03696 | Soybean | nucleus | 16.72 | 21.76 |
| KRH26929 | Soybean | nucleus | 28.3 | 20.85 |
| KRH55997 | Soybean | nucleus | 26.37 | 20.35 |
| KRH25541 | Soybean | nucleus | 26.37 | 20.15 |
| KRH22409 | Soybean | nucleus | 27.01 | 20.05 |
Protein Annotations
| EntrezGene:100802961 | MapMan:15.5.7.2 | Gene3D:3.30.730.10 | EMBL:ACUP02008143 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| InterPro:DNA-bd_dom_sf | EnsemblPlantsGene:GLYMA_13G088100 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| UniProt:I1LVZ7 | InterPro:IPR001471 | InterPro:IPR036955 | EnsemblPlants:KRH18890 | ProteinID:KRH18890 | ProteinID:KRH18890.1 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI0001BA8D44 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr13:+:20155571..20157489
Molecular Weight (calculated)
34053.9 Da
IEP (calculated)
6.368
GRAVY (calculated)
-0.603
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATMNFYNE TSQQVQSDPF RGELMEVLEP FMKTCPSSTP SILSSDSPSP SSYSPLLPPH PSFSTYTPSA YLFQNQQPLI GFEQQPSSLL GLNHLSTSQI
101: SQIQAQAQAQ NSLSLNFLGP KPVPMKHVGG PAKPTKLYRG VRQRHWGKWV AEIRLPKNRT RLWLGTFDTA EEAALAYDKA AYRLRGDLAR LNFPNLKGSC
201: PGEEYKPMQA AVDAKLDAIC ANLAEMQKQG KNEKGARSGK KSKQGPNLEA KPEPEASGSG AAALSPESEG SADSSALSDL TFDVTEPQWE DASAHFNLQK
301: FPSYEIDWDS L
101: SQIQAQAQAQ NSLSLNFLGP KPVPMKHVGG PAKPTKLYRG VRQRHWGKWV AEIRLPKNRT RLWLGTFDTA EEAALAYDKA AYRLRGDLAR LNFPNLKGSC
201: PGEEYKPMQA AVDAKLDAIC ANLAEMQKQG KNEKGARSGK KSKQGPNLEA KPEPEASGSG AAALSPESEG SADSSALSDL TFDVTEPQWE DASAHFNLQK
301: FPSYEIDWDS L
001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA
Arabidopsis Description
RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.