Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008343.1-P | Field mustard | nucleus | 96.0 | 77.17 |
| CDY26847 | Canola | nucleus | 96.0 | 77.17 |
| CDX87480 | Canola | nucleus | 80.8 | 73.99 |
| CDX88414 | Canola | nucleus | 82.4 | 64.17 |
| CDX68032 | Canola | nucleus | 81.6 | 63.55 |
| CDX79244 | Canola | nucleus | 81.6 | 61.08 |
| CDY38238 | Canola | nucleus | 60.4 | 58.08 |
| AT1G78080.1 | Thale cress | nucleus | 77.2 | 57.78 |
| CDY21346 | Canola | nucleus | 59.6 | 57.31 |
| CDY08817 | Canola | mitochondrion | 24.8 | 50.41 |
| Solyc04g072900.1.1 | Tomato | nucleus | 48.8 | 46.21 |
| CDY31606 | Canola | nucleus | 47.2 | 45.38 |
| KRH16699 | Soybean | nucleus | 56.0 | 44.87 |
| CDX72672 | Canola | nucleus | 46.0 | 44.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.2 | 44.73 |
| Solyc12g056980.1.1 | Tomato | nucleus | 54.8 | 44.63 |
| CDX90362 | Canola | nucleus | 45.6 | 44.19 |
| CDX69387 | Canola | nucleus | 46.4 | 43.94 |
| KRH18890 | Soybean | nucleus | 54.4 | 43.73 |
| CDY42004 | Canola | nucleus | 46.0 | 43.56 |
| GSMUA_Achr10P... | Banana | nucleus | 51.2 | 43.54 |
| CDY39455 | Canola | nucleus | 46.4 | 43.12 |
| CDY08816 | Canola | nucleus | 45.2 | 40.07 |
| PGSC0003DMT400022023 | Potato | nucleus | 54.0 | 39.82 |
| CDX89442 | Canola | plastid | 36.8 | 39.48 |
| CDY33983 | Canola | nucleus | 43.2 | 39.27 |
| CDY14542 | Canola | nucleus | 44.0 | 39.01 |
| CDY25578 | Canola | plastid | 36.8 | 38.98 |
| PGSC0003DMT400024508 | Potato | nucleus | 56.8 | 38.69 |
| CDX73367 | Canola | nucleus | 49.2 | 38.32 |
| CDY48227 | Canola | nucleus | 48.8 | 38.01 |
| CDY31284 | Canola | nucleus | 42.0 | 37.77 |
| CDY65537 | Canola | mitochondrion | 21.2 | 30.81 |
| CDX96845 | Canola | nucleus | 22.0 | 30.39 |
| CDX83982 | Canola | nucleus | 22.0 | 30.39 |
| CDX88163 | Canola | mitochondrion | 21.2 | 30.29 |
| CDY36551 | Canola | nucleus | 22.0 | 29.89 |
| CDY19812 | Canola | mitochondrion | 21.2 | 29.61 |
| CDY39637 | Canola | nucleus | 22.4 | 29.32 |
| CDX87096 | Canola | mitochondrion | 21.2 | 29.28 |
| CDY67940 | Canola | nucleus | 22.0 | 28.95 |
| CDY05373 | Canola | mitochondrion | 20.8 | 28.26 |
| CDY05479 | Canola | mitochondrion | 20.8 | 28.11 |
| CDX80507 | Canola | nucleus | 21.2 | 28.04 |
| CDY19805 | Canola | nucleus | 20.4 | 27.72 |
| CDX88176 | Canola | nucleus | 20.8 | 27.51 |
| CDY46525 | Canola | nucleus | 30.8 | 26.92 |
| CDY68539 | Canola | mitochondrion, nucleus | 20.0 | 26.88 |
| CDX69779 | Canola | nucleus | 20.0 | 26.74 |
| CDY71425 | Canola | nucleus | 31.2 | 26.62 |
| CDY47850 | Canola | nucleus | 31.6 | 25.9 |
| CDX87089 | Canola | nucleus | 20.4 | 25.89 |
| CDY14255 | Canola | nucleus | 24.8 | 22.46 |
| CDY29884 | Canola | nucleus | 23.2 | 22.22 |
| CDX97423 | Canola | nucleus | 24.8 | 22.22 |
| CDY58717 | Canola | nucleus | 22.8 | 21.84 |
| CDY19002 | Canola | nucleus | 25.2 | 21.5 |
| CDY53558 | Canola | nucleus | 30.0 | 21.49 |
| CDY69209 | Canola | nucleus | 26.0 | 20.9 |
| CDX81987 | Canola | nucleus | 26.0 | 20.77 |
| CDX89202 | Canola | nucleus | 24.0 | 20.48 |
| CDY08372 | Canola | nucleus | 12.8 | 13.62 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078FNF6 | UniProt:A0A078FNF6 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY14636 | ProteinID:CDY14636 | ProteinID:CDY14636.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00084403001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EDF3C8 | SEG:seg | : | : | : | : |
Description
BnaC02g24770DBnaC02g24770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNF6]
Coordinates
chrLK032045:-:575533..577219
Molecular Weight (calculated)
27739.7 Da
IEP (calculated)
9.005
GRAVY (calculated)
-0.532
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAMNMYSS RTVHQSDSFG GGELMEALVP FIKSVSTSSS SPPATASAFI NSAAPKPLLM KQTGVAGSCF LAKPTKLYRG VRQRHWGKWV AEIRLPRNRT
101: RLWLGTFDTA EEAALAYDKA AFKLRGDHAR LNFPHLRHNG SHIGGEFGEY KPLHSTVDAK LEAICQSMAE TQKEDKTAKA SKKRASKVKK TEKVDLSEKV
201: SPVTEFVESA GSSPLSELTF ADTEEQSRWN ETFSLEKYPS YEIDWDSILS
101: RLWLGTFDTA EEAALAYDKA AFKLRGDHAR LNFPHLRHNG SHIGGEFGEY KPLHSTVDAK LEAICQSMAE TQKEDKTAKA SKKRASKVKK TEKVDLSEKV
201: SPVTEFVESA GSSPLSELTF ADTEEQSRWN ETFSLEKYPS YEIDWDSILS
001: MTTSMDFYSN KTFQQSDPFG GELMEALLPF IKSPSNDSSA FAFSLPAPIS YGSDLHSFSH HLSPKPVSMK QTGTSAAKPT KLYRGVRQRH WGKWVAEIRL
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N
Arabidopsis Description
RAP2-13Ethylene-responsive transcription factor RAP2-13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.