Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010657.1-P | Field mustard | nucleus | 96.9 | 96.9 |
| CDY39455 | Canola | nucleus | 94.57 | 90.71 |
| CDX72672 | Canola | nucleus | 82.56 | 82.88 |
| CDY42004 | Canola | nucleus | 82.17 | 80.3 |
| CDX69387 | Canola | nucleus | 81.78 | 79.92 |
| CDY31606 | Canola | nucleus | 78.68 | 78.08 |
| AT4G39780.1 | Thale cress | nucleus | 77.91 | 73.9 |
| CDX89442 | Canola | plastid | 52.71 | 58.37 |
| CDY25578 | Canola | plastid | 52.71 | 57.63 |
| CDY08817 | Canola | mitochondrion | 24.42 | 51.22 |
| CDY14542 | Canola | nucleus | 51.94 | 47.52 |
| CDY08816 | Canola | nucleus | 50.78 | 46.45 |
| CDY14636 | Canola | nucleus, plastid | 44.19 | 45.6 |
| CDY33983 | Canola | nucleus | 48.45 | 45.45 |
| CDY38238 | Canola | nucleus | 45.74 | 45.38 |
| CDY21346 | Canola | nucleus | 45.74 | 45.38 |
| Solyc04g054910.2.1 | Tomato | nucleus | 48.45 | 44.96 |
| CDY31284 | Canola | nucleus | 47.67 | 44.24 |
| CDX87480 | Canola | nucleus | 45.74 | 43.22 |
| KRG97594 | Soybean | nucleus | 51.16 | 42.72 |
| KRH31278 | Soybean | nucleus | 51.55 | 41.82 |
| CDY26847 | Canola | nucleus | 50.39 | 41.8 |
| CDX68032 | Canola | nucleus | 49.61 | 39.88 |
| CDX88414 | Canola | nucleus | 48.45 | 38.94 |
| CDX79244 | Canola | nucleus | 50.39 | 38.92 |
| PGSC0003DMT400053152 | Potato | nucleus | 53.49 | 37.3 |
| VIT_00s0662g00040.t01 | Wine grape | nucleus | 51.55 | 35.56 |
| CDY48227 | Canola | nucleus | 40.31 | 32.4 |
| CDX73367 | Canola | nucleus | 39.53 | 31.78 |
| CDY65537 | Canola | mitochondrion | 20.93 | 31.4 |
| CDX88163 | Canola | mitochondrion | 20.93 | 30.86 |
| CDY19812 | Canola | mitochondrion | 20.93 | 30.17 |
| CDX87096 | Canola | mitochondrion | 20.93 | 29.83 |
| CDX96845 | Canola | nucleus | 20.93 | 29.83 |
| CDX83982 | Canola | nucleus | 20.93 | 29.83 |
| CDY36551 | Canola | nucleus | 20.93 | 29.35 |
| CDY39637 | Canola | nucleus | 20.93 | 28.27 |
| CDY05373 | Canola | mitochondrion | 20.16 | 28.26 |
| CDY05479 | Canola | mitochondrion | 20.16 | 28.11 |
| CDY67940 | Canola | nucleus | 20.54 | 27.89 |
| CDX88176 | Canola | nucleus | 19.38 | 26.45 |
| CDX80507 | Canola | nucleus | 19.38 | 26.45 |
| CDY46525 | Canola | nucleus | 29.07 | 26.22 |
| CDY19805 | Canola | nucleus | 18.6 | 26.09 |
| CDY68539 | Canola | mitochondrion, nucleus | 18.6 | 25.81 |
| CDX69779 | Canola | nucleus | 18.6 | 25.67 |
| CDY71425 | Canola | nucleus | 29.07 | 25.6 |
| CDY14255 | Canola | nucleus | 26.74 | 25.0 |
| CDX97423 | Canola | nucleus | 26.74 | 24.73 |
| CDY47850 | Canola | nucleus | 29.07 | 24.59 |
| CDX87089 | Canola | nucleus | 18.6 | 24.37 |
| CDY53558 | Canola | nucleus | 32.56 | 24.07 |
| CDY29884 | Canola | nucleus | 24.03 | 23.75 |
| CDX89202 | Canola | nucleus | 26.74 | 23.55 |
| CDY19002 | Canola | nucleus | 26.74 | 23.55 |
| CDY58717 | Canola | nucleus | 23.64 | 23.37 |
| CDX81987 | Canola | nucleus | 26.74 | 22.04 |
| CDY69209 | Canola | nucleus | 25.97 | 21.54 |
| CDY08372 | Canola | nucleus | 9.69 | 10.64 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078DMS7 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX90362 |
| ProteinID:CDX90362 | ProteinID:CDX90362.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00150956001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31657 | PANTHER:PTHR31657:SF9 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EEB806 | SEG:seg | : | : | : | : |
Description
BnaA08g16220D
Coordinates
chrLK031862:-:1406131..1407142
Molecular Weight (calculated)
29169.5 Da
IEP (calculated)
7.568
GRAVY (calculated)
-0.534
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIDMFNSS TNLSDPFKEE LMKVLKPFTN SVSSLPPIPN PIFGFNQTRP LGLNQLTPYQ IYQIQNQLNQ RRNPTTSTLS PKPVAMKNVT AQKLYRGVRQ
101: RHWGKWVAEI RLPKNRTRLW LGTFNTAEEA AMAYDRAAYK LRGELARLNF PYIRHEFGDS RFKALHPSVE AKLEAICQSL GKTELLPPKA EYQESECRSS
201: LRADESLFSD ESHVGSSSPG TLLDFSDSGF DDESGSFVLE KFPSVEIDWD AISKLSES
101: RHWGKWVAEI RLPKNRTRLW LGTFNTAEEA AMAYDRAAYK LRGELARLNF PYIRHEFGDS RFKALHPSVE AKLEAICQSL GKTELLPPKA EYQESECRSS
201: LRADESLFSD ESHVGSSSPG TLLDFSDSGF DDESGSFVLE KFPSVEIDWD AISKLSES
001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA
Arabidopsis Description
RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.