Factsheet for VIT_00s0662g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0662g00030.t01	Wine grape	nucleus	58.82	96.07
VIT_04s0043g00510.t01	Wine grape	mitochondrion, nucleus	7.49	63.64
Solyc04g054910.2.1	Tomato	nucleus	45.99	61.87
VIT_18s0001g05250.t01	Wine grape	nucleus	59.36	60.49
KRH43213	Soybean	nucleus	49.73	59.62
PGSC0003DMT400053152	Potato	nucleus	58.29	58.92
KRH59367	Soybean	nucleus	48.66	58.33
AT4G39780.1	Thale cress	nucleus	38.24	52.57
CDX90362	Canola	nucleus	35.56	51.55
CDY31606	Canola	nucleus	35.83	51.54
Bra017879.1-P	Field mustard	nucleus	35.29	50.77
Bra010657.1-P	Field mustard	nucleus	34.76	50.39
CDX72672	Canola	nucleus	34.49	50.19
CDX69387	Canola	nucleus	35.29	50.0
CDY39455	Canola	nucleus	35.83	49.81
Bra011833.1-P	Field mustard	nucleus	36.63	49.64
CDY42004	Canola	nucleus	35.03	49.62
CDX89442	Canola	plastid	28.07	45.06
Bra030255.1-P	Field mustard	plastid	28.34	44.92
CDY25578	Canola	plastid	28.34	44.92
AT2G22200.1	Thale cress	plastid	29.68	42.53
VIT_07s0031g00420.t01	Wine grape	nucleus	8.56	33.33
VIT_02s0025g01360.t01	Wine grape	nucleus	23.26	32.95
VIT_09s0002g09140.t01	Wine grape	nucleus	14.97	31.64
VIT_04s0008g06000.t01	Wine grape	mitochondrion	15.78	31.55
VIT_09s0002g09120.t01	Wine grape	nucleus	14.44	30.86
VIT_09s0002g06750.t01	Wine grape	mitochondrion	14.71	29.73
VIT_04s0008g05440.t01	Wine grape	nucleus	13.37	25.77
VIT_19s0014g03180.t01	Wine grape	nucleus	27.01	25.06
VIT_11s0016g05340.t01	Wine grape	nucleus	13.64	25.0
VIT_12s0059g00280.t01	Wine grape	nucleus	27.27	21.94
VIT_05s0029g00140.t01	Wine grape	nucleus	23.53	21.78

Protein Annotations

EntrezGene:100253630	wikigene:100253630	EntrezGene:100261438	wikigene:100261438	MapMan:15.5.7.2	Gene3D:3.30.730.10
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CCB48428	ProteinID:CCB48428.1	InterPro:DNA-bd_dom_sf	UniProt:F6H885
EMBL:FN595284	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EntrezGene:LOC100253630	wikigene:LOC100253630	EntrezGene:LOC100261438	wikigene:LOC100261438	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380	SUPFAM:SSF54171
TIGR:TC53660	UniParc:UPI0001983A43	ArrayExpress:VIT_00s0662g00040	EnsemblPlantsGene:VIT_00s0662g00040	EnsemblPlants:VIT_00s0662g00040.t01	unigene:Vvi.1239
RefSeq:XP_002263305	RefSeq:XP_002263305.2	RefSeq:XP_003635449	RefSeq:XP_003635449.1	SEG:seg	:

Description

No Description!

Coordinates

chrUn:+:33765775..33767230

Molecular Weight (calculated)

41132.9 Da

IEP (calculated)

5.649

GRAVY (calculated)

-0.506

Length

374 amino acids

Sequence
(BLAST)

001: MAAAIDIYSS SRTVFSEREE LMKALEPFMK GASSTSSLTS PYPYPSTSSL SPPSTSSSSL PFFSYPPDST QPNMYPDFCS TSTTHMFSQG FSGYDQMGLE
101: QTRSIGLNHI TPAQILQIQA QIQFQQQQQQ RMAAVATASS IQNQRLSQWQ QQHNLNFLGP KAIPMKQVGT PPKPAKLYRG VRQRHWGKWV AEIRLPKNRT
201: RLWLGTFDTA EEAALAYDKA AFKLRGEFAR LNFPNLRHQG SLVAGEFGDY KPLHSSVDAK LQAICQNLAI SQKQGNSGKP GLVADAKIES STHQAEMVLD
301: NSSDPESGFL GLEDCKVEIS SSSSSPSPSD ESSAGSSSPE SDISFLDFTD SQWNDSECLT LEKFPSVEID WASI

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.