Factsheet for VIT_09s0002g09140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g09120.t01	Wine grape	nucleus	85.88	86.86
VIT_04s0043g00510.t01	Wine grape	mitochondrion, nucleus	21.47	86.36
GSMUA_Achr7P19320_001	Banana	nucleus	53.11	61.44
VIT_04s0008g06000.t01	Wine grape	mitochondrion	62.71	59.36
GSMUA_Achr5P22840_001	Banana	mitochondrion, nucleus	50.85	55.9
Zm00001d052026_P001	Maize	mitochondrion	48.02	55.19
OQU85888	Sorghum	mitochondrion	48.02	54.84
KRH05258	Soybean	nucleus	61.02	53.47
GSMUA_Achr10P...	Banana	mitochondrion	53.11	53.41
KRH15790	Soybean	nucleus	59.89	53.27
TraesCS6A01G360300.1	Wheat	mitochondrion	49.72	53.01
TraesCS6B01G393200.1	Wheat	mitochondrion	50.28	52.35
TraesCS6D01G343800.1	Wheat	mitochondrion	50.28	52.35
TraesCS7D01G147200.1	Wheat	mitochondrion, nucleus	46.89	50.92
TraesCS7B01G048100.1	Wheat	mitochondrion	46.33	50.62
TraesCS7D01G147100.1	Wheat	mitochondrion, nucleus	46.89	50.61
TraesCS7A01G145800.1	Wheat	mitochondrion, nucleus	47.46	50.6
Os02t0797100-00	Rice	mitochondrion	49.15	50.58
Zm00001d035835_P001	Maize	mitochondrion	48.02	49.13
Zm00001d045120_P001	Maize	mitochondrion	46.89	49.11
Os06t0181700-01	Rice	mitochondrion	49.15	48.88
EER87969	Sorghum	mitochondrion	48.59	47.51
VIT_07s0031g00420.t01	Wine grape	nucleus	24.86	45.83
GSMUA_Achr7P16060_001	Banana	mitochondrion	53.11	39.83
VIT_09s0002g06750.t01	Wine grape	mitochondrion	37.29	35.68
VIT_04s0008g05440.t01	Wine grape	nucleus	37.85	34.54
VIT_11s0016g05340.t01	Wine grape	nucleus	38.42	33.33
HORVU7Hr1G029870.1	Barley	mitochondrion	24.86	18.57
VIT_00s0662g00030.t01	Wine grape	nucleus	22.6	17.47
VIT_02s0025g01360.t01	Wine grape	nucleus	24.86	16.67
VIT_00s0662g00040.t01	Wine grape	nucleus	31.64	14.97
VIT_18s0001g05250.t01	Wine grape	nucleus	30.51	14.71
VIT_05s0029g00140.t01	Wine grape	nucleus	26.55	11.63
VIT_12s0059g00280.t01	Wine grape	nucleus	29.38	11.18
VIT_19s0014g03180.t01	Wine grape	nucleus	24.29	10.67

Protein Annotations

EntrezGene:100255943	wikigene:100255943	MapMan:15.5.7.1	Gene3D:3.30.730.10	UniProt:A5AEC6	EMBL:AM424440
InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CAN75569	ProteinID:CAN75569.1	ProteinID:CCB59718
ProteinID:CCB59718.1	InterPro:DNA-bd_dom_sf	EMBL:FN596494	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100255943	wikigene:LOC100255943	PFAM:PF00847
PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF4	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI000151E6AA	ArrayExpress:VIT_09s0002g09140	EnsemblPlantsGene:VIT_09s0002g09140	EnsemblPlants:VIT_09s0002g09140.t01	RefSeq:XP_002274284
RefSeq:XP_002274284.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:-:10792054..10792747

Molecular Weight (calculated)

19964.5 Da

IEP (calculated)

8.085

GRAVY (calculated)

-0.673

Length

177 amino acids

Sequence
(BLAST)

001: MAGQQQRYRG VRQRHWGSWV SEIRHPQLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR TNFTYNSDDS QSSSSKLLSA TLTAKLQRCY MASPQGAKIP
101: LATDFQQPHY SPNFGTVDGM AARNCQVSIG SPAKRRRQVQ GKWVGGEDEE FKVLEDDHIE QMIEELLHSG SIELGFV

Best Arabidopsis Sequence Match ( AT5G25190.1 )
(BLAST)

001: MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR TNFPYNPNAI PTSSSKLLSA TLTAKLHKCY MASLQMTKQT
101: QTQTQTQTAR SQSADSDGVT ANESHLNRGV TETTEIKWED GNANMQQNFR PLEEDHIEQM IEELLHYGSI ELCSVLPTQT L

Arabidopsis Description

ERF003Ethylene-responsive transcription factor ERF003 [Source:UniProtKB/Swiss-Prot;Acc:Q94AW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.