Factsheet for VIT_04s0008g05440.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g053240.2.1	Tomato	nucleus	13.4	83.87
KRH52445	Soybean	nucleus	66.49	69.73
KRH61776	Soybean	nucleus	67.01	67.71
VIT_04s0043g00510.t01	Wine grape	mitochondrion, nucleus	14.95	65.91
CDY68539	Canola	mitochondrion, nucleus	60.82	63.44
Bra008985.1-P	Field mustard	nucleus	60.82	63.1
CDX69779	Canola	nucleus	60.82	63.1
AT5G11190.1	Thale cress	mitochondrion, nucleus	60.82	62.43
AT5G25390.2	Thale cress	nucleus	59.28	60.85
Bra036543.1-P	Field mustard	nucleus	57.22	60.66
CDY19805	Canola	nucleus	57.22	60.33
VIT_09s0002g06750.t01	Wine grape	mitochondrion	56.7	59.46
VIT_11s0016g05340.t01	Wine grape	nucleus	61.34	58.33
CDX88176	Canola	nucleus	56.19	57.67
CDX80507	Canola	nucleus	56.19	57.67
CDX87089	Canola	nucleus	57.73	56.85
PGSC0003DMT400077702	Potato	nucleus	57.22	54.95
Bra009837.1-P	Field mustard	mitochondrion, nucleus	44.33	50.59
VIT_07s0031g00420.t01	Wine grape	nucleus	20.62	41.67
VIT_09s0002g09140.t01	Wine grape	nucleus	34.54	37.85
VIT_09s0002g09120.t01	Wine grape	nucleus	34.02	37.71
VIT_04s0008g06000.t01	Wine grape	mitochondrion	35.57	36.9
VIT_02s0025g01360.t01	Wine grape	nucleus	24.74	18.18
VIT_00s0662g00030.t01	Wine grape	nucleus	19.59	16.59
VIT_18s0001g05250.t01	Wine grape	nucleus	26.8	14.17
VIT_00s0662g00040.t01	Wine grape	nucleus	25.77	13.37
VIT_05s0029g00140.t01	Wine grape	nucleus	24.23	11.63
VIT_19s0014g03180.t01	Wine grape	nucleus	22.16	10.67
VIT_12s0059g00280.t01	Wine grape	nucleus	21.65	9.03

Protein Annotations

EntrezGene:100259484	wikigene:100259484	MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CCB46802	ProteinID:CCB46802.1	InterPro:DNA-bd_dom_sf	UniProt:F6H324
EMBL:FN595231	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EntrezGene:LOC100259484	wikigene:LOC100259484	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF13	SMART:SM00380	SUPFAM:SSF54171	TIGR:TC56873
UniParc:UPI00019830C2	ArrayExpress:VIT_04s0008g05440	EnsemblPlantsGene:VIT_04s0008g05440	EnsemblPlants:VIT_04s0008g05440.t01	unigene:Vvi.10812	RefSeq:XP_002285107
RefSeq:XP_002285107.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:4890491..4892348

Molecular Weight (calculated)

21554.4 Da

IEP (calculated)

8.657

GRAVY (calculated)

-0.707

Length

194 amino acids

Sequence
(BLAST)

001: MVSATKKFRG VRQRQWGSWV SEIRHPLLKR RVWLGTFESA EAAARAYDQA AILMNGQNAK TNFPVVKNDQ GEVKSSAGTD HEDESPLSRK ALSEILTTKL
101: RKCCKDPSPS LTCLRLDTDN SHLGVWQKRA GTRSGSSWVM RVELGKKDGQ VSDENSSSFL RSPRGGAEAG DGVDGEEDRM AMQMIEELLN WNCP

Best Arabidopsis Sequence Match ( AT1G15360.2 )
(BLAST)

001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPLNNNNTG ETSEGKTDIS ASSTMSSSTS SSSLSSILSA
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN

Arabidopsis Description

WIN1Ethylene-responsive transcription factor WIN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.