Factsheet for PGSC0003DMT400077702

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g053240.2.1	Tomato	nucleus	14.36	93.55
KRH52445	Soybean	nucleus	54.95	60.0
KRH61776	Soybean	nucleus	54.95	57.81
VIT_04s0008g05440.t01	Wine grape	nucleus	54.95	57.22
Bra036543.1-P	Field mustard	nucleus	50.99	56.28
KRH05157	Soybean	nucleus	55.45	56.28
CDY19805	Canola	nucleus	50.99	55.98
AT5G25390.2	Thale cress	nucleus	50.99	54.5
CDX88176	Canola	nucleus	50.99	54.5
CDY68539	Canola	mitochondrion, nucleus	50.0	54.3
CDX69779	Canola	nucleus	50.0	54.01
Bra008985.1-P	Field mustard	nucleus	50.0	54.01
CDX80507	Canola	nucleus	50.0	53.44
CDX87089	Canola	nucleus	51.98	53.3
AT5G11190.1	Thale cress	mitochondrion, nucleus	49.51	52.91
PGSC0003DMT400007494	Potato	nucleus	50.99	50.99
PGSC0003DMT400001703	Potato	nucleus	50.99	50.0
Bra009837.1-P	Field mustard	mitochondrion, nucleus	39.6	47.06
PGSC0003DMT400036817	Potato	mitochondrion, nucleus	34.16	43.4
PGSC0003DMT400036634	Potato	mitochondrion, nucleus	34.16	43.4
PGSC0003DMT400039593	Potato	nucleus	13.86	38.89
PGSC0003DMT400073334	Potato	mitochondrion	34.16	37.91
PGSC0003DMT400067218	Potato	mitochondrion	35.15	36.22
PGSC0003DMT400080372	Potato	nucleus	22.77	17.83
PGSC0003DMT400031685	Potato	nucleus	23.76	16.33
PGSC0003DMT400014953	Potato	nucleus	24.75	16.03
PGSC0003DMT400022023	Potato	nucleus	24.26	14.45
PGSC0003DMT400053152	Potato	nucleus	25.25	13.78
PGSC0003DMT400024508	Potato	nucleus	24.75	13.62
PGSC0003DMT400091991	Potato	nucleus	19.31	11.47
PGSC0003DMT400047265	Potato	nucleus	20.79	10.8
PGSC0003DMT400039576	Potato	nucleus	18.81	10.76

Protein Annotations

MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:M1CYS6	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400030228	PGSC:PGSC0003DMG400030228	EnsemblPlants:PGSC0003DMT400077702
PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF13	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0002954488	SEG:seg	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030228]

Coordinates

chr6:-:38886068..38887258

Molecular Weight (calculated)

22935.3 Da

IEP (calculated)

9.604

GRAVY (calculated)

-0.714

Length

202 amino acids

Sequence
(BLAST)

001: MVQSKKFKGV RQRQWGSWVS EIRHPLLKKR IWLGTFETAE EAARAYDEAA ILMNGHVAKT NFPIVKESTV NNNGTNDKKF PLTSSSTLSS TVLNAKLRKC
101: CKHPAPSMTC LRLDNDNCHI GVWQKRSGKH SGSNWITKIE LGKKEEKPHD HQNMNSELGI SKPLDEENRI AMQMVEELLN WNSPFSHEPI TDHLSPSFSN
201: SI

Best Arabidopsis Sequence Match ( AT5G25390.2 )
(BLAST)

001: MVHSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE TAARAYDQAA VLMNGQSAKT NFPVIKSNGS NSLEINSALR SPKSLSELLN AKLRKNCKDQ
101: TPYLTCLRLD NDSSHIGVWQ KRAGSKTSPN WVKLVELGDK VNARPGGDIE TNKMKVRNED VQEDDQMAMQ MIEELLNWTC PGSGSIAQV

Arabidopsis Description

SHN3SHN3 [Source:UniProtKB/TrEMBL;Acc:A0A178USD7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.