Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g009490.1.1 | Tomato | nucleus | 93.07 | 84.68 |
| KRH09737 | Soybean | nucleus | 57.43 | 65.91 |
| VIT_09s0002g06750.t01 | Wine grape | mitochondrion | 56.44 | 61.62 |
| Os02t0202000-01 | Rice | nucleus | 61.88 | 60.98 |
| HORVU6Hr1G038120.3 | Barley | nucleus | 60.4 | 59.22 |
| PGSC0003DMT400001703 | Potato | nucleus | 60.4 | 59.22 |
| TraesCS6B01G210300.1 | Wheat | nucleus | 60.4 | 58.94 |
| TraesCS6A01G181400.2 | Wheat | nucleus | 60.4 | 58.94 |
| GSMUA_Achr9P28540_001 | Banana | mitochondrion, nucleus | 57.92 | 58.79 |
| Zm00001d015759_P001 | Maize | nucleus | 61.88 | 58.69 |
| GSMUA_Achr7P10160_001 | Banana | nucleus | 58.42 | 57.28 |
| KXG29745 | Sorghum | nucleus | 60.4 | 57.28 |
| PGSC0003DMT400077702 | Potato | nucleus | 50.99 | 50.99 |
| PGSC0003DMT400036634 | Potato | mitochondrion, nucleus | 33.17 | 42.14 |
| PGSC0003DMT400036817 | Potato | mitochondrion, nucleus | 33.17 | 42.14 |
| PGSC0003DMT400039593 | Potato | nucleus | 14.36 | 40.28 |
| PGSC0003DMT400073334 | Potato | mitochondrion | 34.65 | 38.46 |
| PGSC0003DMT400067218 | Potato | mitochondrion | 33.66 | 34.69 |
| PGSC0003DMT400080372 | Potato | nucleus | 26.24 | 20.54 |
| PGSC0003DMT400014953 | Potato | nucleus | 27.72 | 17.95 |
| PGSC0003DMT400031685 | Potato | nucleus | 25.25 | 17.35 |
| PGSC0003DMT400022023 | Potato | nucleus | 26.24 | 15.63 |
| PGSC0003DMT400053152 | Potato | nucleus | 27.23 | 14.86 |
| PGSC0003DMT400024508 | Potato | nucleus | 25.74 | 14.17 |
| PGSC0003DMT400047265 | Potato | nucleus | 23.27 | 12.08 |
| PGSC0003DMT400091991 | Potato | nucleus | 19.31 | 11.47 |
| PGSC0003DMT400039576 | Potato | nucleus | 19.31 | 11.05 |
Protein Annotations
| EntrezGene:102590176 | MapMan:15.5.7.1 | MapMan:21.9.3.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | ncoils:Coil | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0ZT30 | PFAM:PF00847 | EnsemblPlantsGene:PGSC0003DMG400002889 |
| PGSC:PGSC0003DMG400002889 | EnsemblPlants:PGSC0003DMT400007494 | PIRSF:PIRSF038123 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 |
| PANTHER:PTHR31194:SF24 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000294C464 | RefSeq:XP_006345282.1 | SEG:seg |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002889]
Coordinates
chr12:+:2932805..2934850
Molecular Weight (calculated)
23004.3 Da
IEP (calculated)
8.876
GRAVY (calculated)
-0.770
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MVHSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFDTAE EAARAYDEAA ILMSGRNAKT NFPITQDLDN NKDVKAKLDQ ESPSSFSSPK ALSEILHAKL
101: RKCSKVPSPS LTCLRLDIES SHIGVWQKRA GPSSDSKWVM TVELQKKNNP KNINVHEGEL NNDNNNNSKN NCGEIVEGIS IRSEMDEEER IALQMIEELL
201: QR
101: RKCSKVPSPS LTCLRLDIES SHIGVWQKRA GPSSDSKWVM TVELQKKNNP KNINVHEGEL NNDNNNNSKN NCGEIVEGIS IRSEMDEEER IALQMIEELL
201: QR
001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPLNNNNTG ETSEGKTDIS ASSTMSSSTS SSSLSSILSA
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN
Arabidopsis Description
WIN1Ethylene-responsive transcription factor WIN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.