CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015759_P001	Maize	nucleus	95.77	95.77
TraesCS6A01G181400.2	Wheat	nucleus	80.28	82.61
TraesCS6B01G210300.1	Wheat	nucleus	79.81	82.13
HORVU6Hr1G038120.3	Barley	nucleus	79.34	82.04
Os02t0202000-01	Rice	nucleus	78.4	81.46
GSMUA_Achr9P28540_001	Banana	mitochondrion, nucleus	63.38	67.84
GSMUA_Achr7P10160_001	Banana	nucleus	63.38	65.53
KRH09737	Soybean	nucleus	53.99	65.34
EER90018	Sorghum	nucleus	71.83	65.11
VIT_09s0002g06750.t01	Wine grape	mitochondrion	53.99	62.16
PGSC0003DMT400007494	Potato	nucleus	57.28	60.4
VIT_11s0016g05340.t01	Wine grape	nucleus	57.28	59.8
KRH62994	Soybean	nucleus	58.22	56.88
KRH54960	Soybean	nucleus	56.81	55.25
Solyc12g009490.1.1	Tomato	nucleus	56.81	54.5
KRH03696	Soybean	nucleus	58.69	52.3
KRH20262	Soybean	nucleus	58.22	52.1
OQU85888	Sorghum	mitochondrion	30.99	42.58
EES12999	Sorghum	mitochondrion	32.39	40.12
EER87969	Sorghum	mitochondrion	30.99	36.46
EES13814	Sorghum	nucleus	24.41	19.19
EER92713	Sorghum	nucleus	23.94	16.09
KXG35507	Sorghum	nucleus	22.54	15.79
EES07235	Sorghum	nucleus	23.94	15.41
EES19973	Sorghum	plastid	20.66	14.57
EER89448	Sorghum	nucleus	23.0	13.35
OQU85375	Sorghum	nucleus	24.88	11.32
KXG26694	Sorghum	nucleus	21.13	9.74

Protein Annotations

MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	UniProt:A0A194YPI8	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EnsemblPlants:KXG29745	ProteinID:KXG29745	ProteinID:KXG29745.1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF12	SMART:SM00380	EnsemblPlantsGene:SORBI_3004G084600	SUPFAM:SSF54171
UniParc:UPI0007F21352	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:7021851..7023440

Molecular Weight (calculated)

23110.2 Da

IEP (calculated)

9.999

GRAVY (calculated)

-0.595

Length

213 amino acids

Sequence
(BLAST)

001: MTENLHSKKM VQPKKFRGVR QRHWGSWVSE IRHPLLKRRV WLGTFETAEE AARAYDEAAV LMSGRNAKTN FPVQRSSTGE PTPAAGRDAH SNAGSGSSTA
101: NLSQILSAKL RKCCKAPSPS LTCLRLDPEK SHIGVWQKRA GARADSNWVM TVELNKGAAS TDAASQSTSA TTAPPATPMD DEERIALQMI EELLSSSSPA
201: SPSHGDDQGR FII

Best Arabidopsis Sequence Match ( AT1G15360.2 )
(BLAST)

001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPLNNNNTG ETSEGKTDIS ASSTMSSSTS SSSLSSILSA
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN

Arabidopsis Description

WIN1Ethylene-responsive transcription factor WIN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.