CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026486_P001	Maize	mitochondrion	86.05	86.05
TraesCS2D01G503900.1	Wheat	mitochondrion	61.05	67.31
TraesCS2B01G531100.1	Wheat	mitochondrion	60.47	67.1
TraesCS2A01G503100.1	Wheat	mitochondrion	61.05	66.88
TraesCS2B01G530800.1	Wheat	nucleus	57.56	65.56
TraesCS2D01G503100.1	Wheat	nucleus	55.81	64.0
Os04t0655700-00	Rice	nucleus	47.09	52.94
OQU85888	Sorghum	mitochondrion	40.12	44.52
EER87969	Sorghum	mitochondrion	41.86	39.78
GSMUA_Achr4P02200_001	Banana	mitochondrion	52.33	38.63
KXG29745	Sorghum	nucleus	40.12	32.39
EER90018	Sorghum	nucleus	38.37	28.09
EES13814	Sorghum	nucleus	30.81	19.56
KXG35507	Sorghum	nucleus	29.07	16.45
EER92713	Sorghum	nucleus	30.23	16.4
EES19973	Sorghum	plastid	25.58	14.57
EES07235	Sorghum	nucleus	27.91	14.5
EER89448	Sorghum	nucleus	27.33	12.81
KXG26694	Sorghum	nucleus	26.16	9.74
OQU85375	Sorghum	nucleus	24.42	8.97

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:8070251	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
UniProt:C5Y9H9	InterPro:DNA-bd_dom_sf	EnsemblPlants:EES12999	ProteinID:EES12999	ProteinID:EES12999.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF4	SMART:SM00380
EnsemblPlantsGene:SORBI_3006G247000	SUPFAM:SSF54171	UniParc:UPI0001A8746C	RefSeq:XP_002448671.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:58590635..58591952

Molecular Weight (calculated)

18629.7 Da

IEP (calculated)

6.356

GRAVY (calculated)

-0.645

Length

172 amino acids

Sequence
(BLAST)

001: MPKLQRFRGV RQRHWGSWVS EIRHPLLKTR IWLGTYETAE DAARAYDEAA RLMSGPAART NFPLSVSGGG GTLSPTLRAK LEKCCTAPAQ EPQHGADVSR
101: TGGGVGRDDV DGSSRKEVQA AVKVDPDADD PDGEEYIEEM IRELTYYGPV EIQQHHPPSA SSAAAASSSA IR

Best Arabidopsis Sequence Match ( AT5G25190.1 )
(BLAST)

001: MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR TNFPYNPNAI PTSSSKLLSA TLTAKLHKCY MASLQMTKQT
101: QTQTQTQTAR SQSADSDGVT ANESHLNRGV TETTEIKWED GNANMQQNFR PLEEDHIEQM IEELLHYGSI ELCSVLPTQT L

Arabidopsis Description

ERF003Ethylene-responsive transcription factor ERF003 [Source:UniProtKB/Swiss-Prot;Acc:Q94AW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.