CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018081_P001	Maize	nucleus	92.75	90.03
TraesCS6D01G281200.1	Wheat	nucleus	78.55	78.08
TraesCS6A01G301900.1	Wheat	nucleus	77.34	78.05
TraesCS6B01G331000.1	Wheat	nucleus	77.95	77.48
HORVU6Hr1G074970.1	Barley	nucleus	76.13	76.36
Os02t0752800-01	Rice	nucleus	77.64	76.04
EER89448	Sorghum	nucleus	63.75	57.49
GSMUA_Achr3P04360_001	Banana	nucleus	41.39	54.8
EES13814	Sorghum	nucleus	37.76	46.13
KXG35507	Sorghum	nucleus	42.3	46.05
EER92713	Sorghum	nucleus	41.39	43.22
CDY48227	Canola	nucleus	38.07	39.25
Bra040381.1-P	Field mustard	nucleus	38.07	39.25
CDX73367	Canola	nucleus	37.76	38.94
AT1G36060.1	Thale cress	nucleus	36.86	38.85
OQU85888	Sorghum	mitochondrion	15.41	32.9
EER87969	Sorghum	mitochondrion	16.31	29.83
EES12999	Sorghum	mitochondrion	14.5	27.91
KXG29745	Sorghum	nucleus	15.41	23.94
EES19973	Sorghum	plastid	21.15	23.18
EER90018	Sorghum	nucleus	15.41	21.7
OQU85375	Sorghum	nucleus	27.19	19.23
KXG26694	Sorghum	nucleus	26.59	19.05

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	EntrezGene:8066410	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5XYP1
InterPro:DNA-bd_dom_sf	EnsemblPlants:EES07235	ProteinID:EES07235	ProteinID:EES07235.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF21	SMART:SM00380	EnsemblPlantsGene:SORBI_3004G233200	SUPFAM:SSF54171
unigene:Sbi.1171	UniParc:UPI0001A8594C	RefSeq:XP_002454259.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:58196840..58198757

Molecular Weight (calculated)

35736.6 Da

IEP (calculated)

6.633

GRAVY (calculated)

-0.545

Length

331 amino acids

Sequence
(BLAST)

001: MAAAIDMYKY YNAHQIASSS PSDEELAKAL EPFITSASSS SPYHRYSSSP SMSQDSYMPT PSYTSFATSP LPTPAATSSS SSPFSQLPPL YSSPYAAPSM
101: VGQMGLNQLG PAQIQQIQAQ FMFQQQQQQQ RGLHAAFLGP RAQPMKQSGS PPLAPAQSKL YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF DTAEDAALAY
201: DKAAFRLRGD MARLNFPALR RDGAHLAGPL HASVDAKLTA ICQSLTGSKN GGSSGDESAG SPPDSPKCSA SASTEGEEES GSAGSPPSPT LAPPVPEMAK
301: LDFTEAPWDE TETFHLRKYP SWEIDWDSIL S

Best Arabidopsis Sequence Match ( AT4G39780.1 )
(BLAST)

001: MAAIDMFNSN TDPFQEELMK ALQPYTTNTD SSSPTYSNTV FGFNQTTSLG LNQLTPYQIH QIQNQLNQRR NIISPNLAPK PVPMKNMTAQ KLYRGVRQRH
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES

Arabidopsis Description

ERF060Ethylene-responsive transcription factor ERF060 [Source:UniProtKB/Swiss-Prot;Acc:O65665]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.