Factsheet for Zm00001d018081_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07235	Sorghum	nucleus	90.03	92.75
Zm00001d052229_P001	Maize	nucleus	82.11	88.61
TraesCS6D01G281200.1	Wheat	nucleus	78.01	79.88
TraesCS6A01G301900.1	Wheat	nucleus	76.54	79.57
TraesCS6B01G331000.1	Wheat	nucleus	76.83	78.68
Os02t0752800-01	Rice	nucleus	77.13	77.81
HORVU6Hr1G074970.1	Barley	nucleus	74.78	77.27
Zm00001d044857_P001	Maize	nucleus	62.17	60.74
GSMUA_Achr3P04360_001	Banana	nucleus	40.76	55.6
Zm00001d048208_P001	Maize	nucleus	40.47	46.46
Zm00001d032295_P001	Maize	nucleus	35.19	45.8
Zm00001d020267_P001	Maize	nucleus	39.3	45.27
Zm00001d028017_P001	Maize	nucleus	39.59	45.0
Zm00001d030513_P001	Maize	mitochondrion	33.43	41.45
Bra040381.1-P	Field mustard	nucleus	38.12	40.5
CDY48227	Canola	nucleus	38.12	40.5
CDX73367	Canola	nucleus	37.83	40.19
AT1G36060.1	Thale cress	nucleus	36.66	39.81
Zm00001d052026_P001	Maize	mitochondrion	15.54	34.42
Zm00001d045120_P001	Maize	mitochondrion	16.72	33.73
Zm00001d035835_P001	Maize	mitochondrion	15.84	31.21
Zm00001d026486_P001	Maize	mitochondrion	14.66	29.07
Zm00001d009622_P001	Maize	plastid	20.53	26.62
Zm00001d039077_P001	Maize	plastid	20.82	24.74
Zm00001d015759_P001	Maize	nucleus	14.96	23.94
Zm00001d002011_P001	Maize	mitochondrion, nucleus	11.73	23.53
Zm00001d046501_P001	Maize	nucleus	14.66	23.04
Zm00001d036889_P001	Maize	nucleus	14.96	22.17
Zm00001d017366_P001	Maize	nucleus	28.74	21.83
Zm00001d051239_P001	Maize	nucleus	27.57	21.12
Zm00001d025910_P001	Maize	nucleus	24.05	20.3
Zm00001d002867_P001	Maize	nucleus	26.39	19.91

Protein Annotations

EntrezGene:100280553	MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:AQK74988.1
UniProt:B6SIB9	InterPro:DNA-bd_dom_sf	EMBL:EU952484	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31657	PANTHER:PTHR31657:SF21	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000182B91F	EnsemblPlantsGene:Zm00001d018081
EnsemblPlants:Zm00001d018081_P001	EnsemblPlants:Zm00001d018081_T001	SEG:seg	:	:	:

Description

AP2-EREBP-transcription factor 18AP2 domain-containing protein

Coordinates

chr5:+:213912954..213913979

Molecular Weight (calculated)

36571.5 Da

IEP (calculated)

6.630

GRAVY (calculated)

-0.589

Length

341 amino acids

Sequence
(BLAST)

001: MAAAIDMYKY YNTSAHQIPS SSPSDQELAK ALEPFITSAS SSSSSSPYHG YSSSPSMSQD SYMPTPSYTS YATSPLPTPA AASSSQLPPL YSSPYAAPCM
101: AGQMGLNQLG PAQIQQIQAQ FMFQQQQQQQ RGLHAAFLGP RAQPMKQSGS PSPPPPLAPA QSKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEDA
201: ALAYDKAAFR LRGDTARLNF PALRRGGAHL AGPLHASVDA KLTAICQSLS ESKSKSGSSG DESAASPPDS PKCSASTTEG EGEEESGSAG SPPPPPPPPT
301: LAPPVPEMAK LDFTEAPWDE TEAFHLRKYP SWEIDWDSIL S

Best Arabidopsis Sequence Match ( AT1G22190.1 )
(BLAST)

001: MTTSMDFYSN KTFQQSDPFG GELMEALLPF IKSPSNDSSA FAFSLPAPIS YGSDLHSFSH HLSPKPVSMK QTGTSAAKPT KLYRGVRQRH WGKWVAEIRL
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N

Arabidopsis Description

RAP2-13Ethylene-responsive transcription factor RAP2-13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.