Factsheet for TraesCS6B01G331000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G281200.1	Wheat	nucleus	96.7	96.7
TraesCS6A01G301900.1	Wheat	nucleus	94.29	95.73
HORVU6Hr1G074970.1	Barley	nucleus	91.89	92.73
Os02t0752800-01	Rice	nucleus	81.68	80.47
Zm00001d052229_P001	Maize	nucleus	74.77	78.8
EES07235	Sorghum	nucleus	77.48	77.95
Zm00001d018081_P001	Maize	nucleus	78.68	76.83
TraesCS7B01G085900.1	Wheat	nucleus, plastid	63.96	57.88
GSMUA_Achr3P04360_001	Banana	nucleus	39.64	52.8
TraesCS5B01G193200.1	Wheat	nucleus	39.04	45.77
TraesCS4B01G268100.1	Wheat	nucleus	36.04	45.45
CDY48227	Canola	nucleus	38.44	39.88
Bra040381.1-P	Field mustard	nucleus	38.44	39.88
CDX73367	Canola	nucleus	37.84	39.25
AT1G36060.1	Thale cress	nucleus	36.34	38.53
TraesCS2B01G531100.1	Wheat	mitochondrion	15.02	32.26
TraesCS2B01G530800.1	Wheat	nucleus	14.41	31.79
TraesCS6B01G393200.1	Wheat	mitochondrion	16.22	31.76
TraesCS7B01G048100.1	Wheat	mitochondrion	15.02	30.86
TraesCS1B01G441300.1	Wheat	plastid	21.32	25.18
TraesCS6B01G210300.1	Wheat	nucleus	15.02	24.15
TraesCS7B01G277800.1	Wheat	nucleus	15.02	22.22
TraesCS6B01G263800.1	Wheat	nucleus	28.23	20.7
TraesCS2B01G390800.1	Wheat	nucleus	26.73	19.6

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF21	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS6B01G331000	EnsemblPlants:TraesCS6B01G331000.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr6B:-:581867327..581868328

Molecular Weight (calculated)

35717.7 Da

IEP (calculated)

6.682

GRAVY (calculated)

-0.430

Length

333 amino acids

Sequence
(BLAST)

001: MAAAIDMYKY NTSTHQIGSA ASASDQELMK ALEPFITIAS SSPYPYQYYS SPSMTQDSYT ATPSSSYASF ATSPLPTTAP TSPSFSQLPP LYSSQYSTAS
101: GMNGSMGLAQ LGPAQIQQIQ AQFFVQQQQQ QRGLAGSFLG PRAQPMKQSG SPPRASAAAL ALAGVAPAQS KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG
201: TFDTAEDAAL AYDKAAFRLR GDLARLNFPS LRRGGAHLAG PLHASVDAKL TAICESLAAP SSKNSAEAEP ESPKCSASTE GEDSASAGSP PPPTPPVPEM
301: EKLDFTEAPW DESETFHLRK YPSVEIDWDS ILS

Best Arabidopsis Sequence Match ( AT1G78080.1 )
(BLAST)

001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA

Arabidopsis Description

RAP2-4Ethylene-responsive transcription factor RAP2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.