Factsheet for TraesCS5B01G193200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G200900.2	Wheat	nucleus	97.89	97.89
HORVU5Hr1G058270.1	Barley	nucleus	96.83	97.17
HORVU6Hr1G060220.1	Barley	nucleus	65.85	75.71
KXG35507	Sorghum	nucleus	79.23	74.01
Zm00001d020267_P001	Maize	nucleus	75.35	72.3
TraesCS4B01G268100.1	Wheat	nucleus	41.2	44.32
GSMUA_Achr9P12950_001	Banana	nucleus	50.35	42.18
TraesCS6B01G331000.1	Wheat	nucleus	45.77	39.04
TraesCS7B01G085900.1	Wheat	nucleus, plastid	49.65	38.32
CDX73367	Canola	nucleus	38.38	33.96
AT1G36060.1	Thale cress	nucleus	37.32	33.76
Bra040381.1-P	Field mustard	nucleus	37.68	33.33
CDY48227	Canola	nucleus	37.68	33.33
TraesCS2B01G531100.1	Wheat	mitochondrion	17.61	32.26
TraesCS7B01G048100.1	Wheat	mitochondrion	18.31	32.1
TraesCS6B01G393200.1	Wheat	mitochondrion	18.66	31.18
TraesCS2B01G530800.1	Wheat	nucleus	16.2	30.46
TraesCS1B01G441300.1	Wheat	plastid	25.0	25.18
TraesCS6B01G210300.1	Wheat	nucleus	16.9	23.19
TraesCS7B01G277800.1	Wheat	nucleus	16.9	21.33
TraesCS6B01G263800.1	Wheat	nucleus	29.93	18.72
TraesCS2B01G390800.1	Wheat	nucleus	27.11	16.96

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF16	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS5B01G193200	EnsemblPlants:TraesCS5B01G193200.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr5B:-:348570439..348571760

Molecular Weight (calculated)

30581.5 Da

IEP (calculated)

6.880

GRAVY (calculated)

-0.470

Length

284 amino acids

Sequence
(BLAST)

001: MAAAIDLSGE DLVRALEPFI REASAPLPLH SHLSPTSPFS FPHAAYSGYP YGVQAQAQTE LSPAQMHYIQ ARLHLQRQTG QPGQLGPRSQ PMKPASVAAA
101: TPPRPQKLYR GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEEAALAYDQ AAYRLRGDAA RLNFPDNAAS RGPLHASVDA KLQTLCQNIT ASKNAKKSAS
201: VSASTAAATS STPTSNCSSP SSDEASSSLE SAESSPSPAA TTAADVPEMQ QLDFSEAPWD EAACFALTKY PSYEIDWDSL LATN

Best Arabidopsis Sequence Match ( AT4G39780.1 )
(BLAST)

001: MAAIDMFNSN TDPFQEELMK ALQPYTTNTD SSSPTYSNTV FGFNQTTSLG LNQLTPYQIH QIQNQLNQRR NIISPNLAPK PVPMKNMTAQ KLYRGVRQRH
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES

Arabidopsis Description

ERF060Ethylene-responsive transcription factor ERF060 [Source:UniProtKB/Swiss-Prot;Acc:O65665]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.